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Information for unigene UN00197

FASTA Sequence
Unigene ID: UN00197Length: 1110 SSR 
GGGGATATTCGAAAGGGAAACCTTGAGAATATTCTTCTTCTTCTTCTTTTTCTCTTATCAAACACATCACTTAATATCTCTAACCG
CATCCTCCTGCCTTCTTCATTTTCATCTTCCCAGAAAAAAAAGAAAAAAAAAAAAGACAAATGAAGTTTGGTAAGAGTCTGAGCAA
TCAGATCGAGCAGACACTCCCTGAATGGCGCGACAAGTTCTTGTCTTACAAAGACCTCAAGAAGCGTCTCAAACTCATCGCCTCCA
AATCCATCGATCGTCCCGCCAAACGTCTCCGACTAGACTCCTCCTCCGGCGGAGAAATGTCGAAAGAAGAGATGAGTTTCGTCCAG
TTGCTAGAGGACGAGTTGGAGAAATTCAATAATTTCTTCGTCGAGAAGGAGGAAGAGTACATCATCAGACTAAAGGAATTGAGAGA
TAGGATTATCAAAGCAAAGGAGAAGATGATGAGCATCAGGAGAGAGATTGTTGATCTCCACGGAGAGATGGTTCTCCTCGAGAACT
ACAGTGCTCTCAACTACACAGGATTGGTTAAGATACTGAAGAAGTACGACAAGCGTACCGGCGATCTCATGCGTTTGCCTTACATC
CAGAAAGTTCTTCGGCAACCTTTTTACACTACAGACTTGTTGTACAAGCTCATCAAAGAATCCGAGGCAATGCTTGACCGCTACTT
CCCCGATGGAACAGAGTCTTCTTCTTCTTCTTCTTCTGCCAACAACGCCCAAGCAGAGCACAAGTTGGTGGAGAGCCTCCACATGA
AAAGTACAATCGCTGCCTTGCGTGTTTTGCAAGAGATCAGGAGTAAAAGCTCTACGGTGAGTGTCTTCTCGCTCCCGCCGCTCCAG
TTAGATGGAGTGGATGACACGTGGAAGAAGATTCCCTTGATGGAGCAAGAAGCCAAATAGAAAGACAGAGAGTGAGAGGGATGCGT
TTATTCTCCACTTGTGTGTTTTTACAGTAGATGCTAACAGATTGTTAAAAAAAAAGGTACATTATCAATGTGCACACACACAGAAA
AGAAAGGTATCTTTGAAGTCATTAGCGGTTGTAACTGTGTTTCTGTGTAGTAATTGATATGATGGTACACCAATTCAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002871925 SPX domain-containing protein [Arabidopsis lyrata subsp. lyrata]10192e-108
NP_197515 SPX domain-containing protein 1 [Arabidopsis thaliana]10093e-107
AAM64762 ids4-like protein [Arabidopsis thaliana]10084e-107
CBI21037 unnamed protein product [Vitis vinifera]8005e-083
XP_002285100 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]7818e-081

Swiss-Prot top hits (Blast detail)Scoree value
Q55B06 SPX and EXS domain-containing protein 11471e-008

TrEMBL top hits (Blast detail)Scoree value
Q8RY68 AT5g20150/F5O24_4010092e-107
Q8LBH4 Ids4-like protein10083e-107
A5BFC3 Putative uncharacterized protein7304e-075
A2TEC3 IDS4-like protein6435e-065
B9IKW8 Predicted protein6141e-061

Arabidopsis top hits (Blast detail)Scoree value
AT5G20150.1 SPX1 (SPX DOMAIN GENE 1)10198e-111
AT2G26660.1 SPX2 (SPX DOMAIN GENE 2)6693e-070
AT2G45130.1 SPX3 (SPX DOMAIN GENE 3)4812e-048
AT5G15330.1 SPX4 (SPX DOMAIN GENE 4)4166e-041
AT1G14040.1 LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 732 Blast hits to 696 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 246; Plants - 151; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).1245e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information