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Information for unigene UN00207

FASTA Sequence
Unigene ID: UN00207Length: 1836 SSR 
ACCGAATCATCTTTCTTTTATAAGTTAAGCTGCTCATACAAAAAGAAATTGAGAATTGGATAAGAGAGGCAAGATAGAGAGGATTT
AGTTTTCTTTTTCTGTTTTTGTTTCCAAAAAAAGGGTGAATCTATGTACGGTAGATGATCTCACAGCTAAGCTATTACAGAGGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGCTGAGTCAGTTGTGTGGTGTAGATTTTATCAGAAGGATCGTGTGGGAATCTAAAGGTTTTT
AATCTCTTACCAAAAATAGAAATAGTAAAAAAATAGGAGTGGGGGAGATCAAAAATGGGGAAGAAGAAAGAGAAGAAGAAATCGTT
GAGAAGCAAAGCAGTTCACTTTGTCAGCGATCTCACCACCGGTCTCCTTAATCCCATCTCTGATAAACCCTCCTCCTCTCCTCCTC
CGGATGATGAGGGAGATGAGTCCAAGAGAGATCAACTAGAAGAGTCCATCACTGAGAAAGATTTGGTTGACGAGCCTGACACTTCT
TCCTTCTCTGCTTTCCTTGGTTCCCTCTTATCCTCAGACCCCAAGAACAAACAAACCAACCAGGAAGAAGAAGAAGAAGAGGCTGA
ATCAAGCGATACATCATCATCATCGTCCTCATCCTCTGGAACAATGAAAGGAACTACTACTACTGTTTCTGGTGGTGCAAAGAAGA
GCTTGTTGTCCAAGTATAAACAGCATTTTAAGAACTTTTACCACGCTGTTAAGTTCTCCTCCAAGGATCGAAAGGCAAACTTCCCT
GAGGTTGTTAATAAAACTGATGATGATAAAGAAGAGACTAAAGGATATGATGATGGCTTGGAGATGAAGCAGTTGCAGAAGAACAA
AGAGGAAGCTGCAAAGATAGGACAACAAGCAATTGTTATACCCGAAATTTCAGAGCCTTCTTTGCTTTTAACGGACCAGTCTAGAC
GTTCCCTTTATTCTTCCCTTCCTGCTCTTGTTCAAGGCAGGAAATGGATTTTGCTTTACAATACGTGGAGGCACGGTATATCACTC
TCAACGCTGTACAGGAAAAGCCTCCTCTGGCCTGGTCTCAGTTTACTGGTTGTTGGAGACAGGAAAGGTTCGGTTTTTGGTGGACT
TGTGGAGGCACCTTTGATACCAACTGATAAGAAGTATCAGGTTTGGCTCCCCCCCCCCAAAGATCCAATCCTTTTTTTTTTAAATT
AAGATTTCTCTGTTTCTTTTCAGCCTCTAAATTGATGATGATGATCTTCCTCCTTGGTCTCTGCTTTGTTTGTGTTGTGTCAGGGA
ACCAACAGTACATTTGTTTTCACTGATAAGTCTGGACAACCCACTATATACCGTCCCACAGGAGCGAACCGGTTTTACACTTTATG
CTCCAAGGACTTTCTAGCTCTCGGTGGTGGTGGACGCTTTGCGCTCTATCTAGATAGTGAACTGCTAAGTGGATCAAGTGCTTACT
CAGAGACATACGGGAACGCTTGTCTTGCAAACACTCAGGACTTCGATGTTAAAGAAGTGGAGCTATGGGGATTTGTATATGGCTCA
AAGTATGATGAGATTCTAGCTCTCAGCAAAACTACAGAGCCCGGTGTATGCAGGTGGTGATGAATGAAATATTATCATATATAATT
AAAAAAAGAAAAAGAAAAAGAGGTGAGAGATCTCTCTTGTAAATGTGTAGTAATATAATGATGTTGTTCTTAATCACATCTCCAAC
ACACTCACTTGTAACCAAGAAACCTCTTTTTCTTGTCTTGTTGTAATGATTTTGGAGTGGAATTTTCAAGGCATAAAATTGACTCT
TTAGTCAATGCAGATTGTTTGAGGTTTATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195697 TLD-domain containing nucleolar protein [Arabidopsis thaliana]9381e-098
AAL38841 unknown protein [Arabidopsis thaliana]9291e-097
XP_002866890 hypothetical protein ARALYDRAFT_490773 [Arabidopsis lyrata subsp. lyrata]9083e-095
CAB38900 putative protein [Arabidopsis thaliana]5364e-052
XP_002310564 predicted protein [Populus trichocarpa]4692e-044

Swiss-Prot top hits (Blast detail)Scoree value
Q8N573 Oxidation resistance protein 11615e-010
Q4KMM3 Oxidation resistance protein 11607e-010
Q4V8B0 Oxidation resistance protein 11607e-010
A8KBE0 Oxidation resistance protein 11581e-009
A5PKL1 Oxidation resistance protein 11553e-009

TrEMBL top hits (Blast detail)Scoree value
Q8GUN9 Putative uncharacterized protein At4g398709387e-099
Q8VZ09 Putative uncharacterized protein At4g39870 (Fragment)9297e-098
Q9SMR6 Putative uncharacterized protein AT4g398705363e-052
B9HFG6 Predicted protein4692e-044
B9SZ36 Putative uncharacterized protein4549e-043

Arabidopsis top hits (Blast detail)Scoree value
AT4G39870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins in 220 species: Archae - 0; Bacteria - 39; Metazoa - 1002; Fungi - 279; Plants - 129; Viruses - 34; Other Eukaryotes - 535 (source: NCBI BLink).9384e-101
AT2G05590.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).2986e-027
AT2G05590.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).2233e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  25%
 
111  25%
 
102  50%

Unigene MembersMember information