RadishBase

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Information for unigene UN00242

FASTA Sequence

Unigene ID: UN00242	Length: 990	SSR
GGATTTTATTCTCTCTATATAGCAGCAGCCTTAAAACTCTCCTGTCGAATCTCTTTTCCTCCTTGATCAACAATGGAATTTTGGGG AGTTGAAGTTAAGGCTGGGATGCCACTAAAAGTGAGGCCTCAAGTAGATCATCTCATCCACCTTTCTCAGGCTACGATTGATGCCA AAAAGGGAGAATCTGGTCTCTTGTACGTGACTATTGATTGGAAGAAACATGTCATTGGAACGCTCTCTCAAGACCACATTCCTCAG ATGACCTTTGACCTTGTCTTCGAGCAGGAGTTTGAGCTTTCTCACTCTTTGGAGAGTGGTAGTGTCCACTTTGTTGGCTACAGGTC TCCCAACATCGATCAAGAGGAGGACTACCCTTCTGATGATTCTGAGGAGGAGGCGGTTCCTGCTACTTCTACTGTCACTTCCGTTG GGAATGCTGCTGCTGCCTCAAAACCAAAAGCCAATCCTGTCGAAGTGAAGCCTGAGTCTGATGATGATGATGAGTCTGGCGAGGAT GATGAAGAAGATGACTCTGAGGAGGAGGATGAAGAAGAAGAGGAGACCCCTAAGCAGCCTGAGGAGCCGAGCAACAAGAAGAGGGC CACTGCATCTGCTTCCAAAACACCTGTCCCAGCAAAGAAGACAAAAACTGCAGTAGCACCCACTCCTCAGAACACTGAAGAGAAGA AGAAGGGGGGGCACACAGCTGCCCCCCACCCAGCTAAAAAGGGTGGAAAGAGCCCTAACCAGAGCCCAGGTCAATCATCCGGTGGT AACAAGAAGCAAGTCAATTTTGGCAAGCAGTCTGGTTTTAACAACAAGGGCAAGGGAAAAGGAAAGGGCAGAGCCTAAGTTGCTTG TTTGAACAAACAATAAGTAGTTTTTGGTTTCCCTTATGTTTTAAGATTTTATTTATTTTTGGAAAAGTTATTTAACTAGTTGCAAC TTTTATGTAATTCAGTATGAAATATTCCCTTGAATGATAAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002313645 histone deacetylase [Populus trichocarpa]	510	2e-049
NP_566872 histone deacetylase HDT1 [Arabidopsis thaliana]	506	5e-049
AAB70032 putative histone deacetylase [Arabidopsis thaliana]	506	5e-049
ABK92949 unknown [Populus trichocarpa]	503	1e-048
NP_001190012 histone deacetylase HDT1 [Arabidopsis thaliana]	494	1e-047

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FVE6 Histone deacetylase HDT1	506	2e-050
Q6V9I6 Histone deacetylase HDT1	492	9e-049
Q9M4U5 Histone deacetylase HDT2	417	5e-040
Q56WH4 Histone deacetylase HDT2	401	3e-038
Q9M4U4 Histone deacetylase HDT3	328	1e-029

TrEMBL top hits (Blast detail)	Score	e value
B9HQL3 Histone deacetylase	510	1e-049
A9P996 Putative uncharacterized protein	503	8e-049
A9P9Y3 Putative uncharacterized protein	422	2e-039
A9P950 Putative uncharacterized protein	421	3e-039
B9MYK2 Histone deacetylase	421	3e-039

Arabidopsis top hits (Blast detail)	Score	e value
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding	521	4e-053
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding	410	3e-040
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase	402	2e-039
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase	402	2e-039
AT3G56570.1 SET domain-containing protein	124	4e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	3			100%

Unigene Members	Member information