 |
Information for unigene UN00317
| FASTA Sequence |
| Unigene ID: UN00317 | Length: 1321 |
SSR | | GCTGAAGTCATCATGTTCATATCATATGAGCCGAGGGAAAAAAAGAGAGTACATATGGGTAGCTTTAGAAGTTACAGAGGAAGATA
AGTATATATTTAAGCAGCCACTGGAGTTTTGAGGGCTTCGAGTATCTTGTCATCTAATTCAAACTTCATCTCCTTCTTGTCTCTGC
CAATCTTAACGTACTCCTCATATCTCTCCTTGAGATCTTCAGGCAGATTAGTTTTACTTTCCCATCCTAATATATCCTTTGCTGCT
CTTGGTTCCGCGTAAAAATGCATGTTTCTGAATGGAAAAGCCTTCTTGGCGTCAACCCCAATGGCTTTAGGGTCGTAATGCACGAT
CTCAACGGTTTTGCCAGCAGCAGCAGCACAGAGCTTGGCCATACCGTCAAGAGTGACGGCTCTGTCACTAACGCAGTTGAAGATGT
TGCAGGAGGCAGCCTCAGGGTTGGACGCAGCTGAAGTGAGCATGGAAGACAAGTCTCTGACATGAAATATGTTGGTTAGCTGCAAT
CCTGATCCTGGTATTGGCACTGGTCTATCCCTCACAATCCTGTCGAAGAACCATTCTTCGCAGTCTTTGTTGTTGCCAGAACCGAT
CATGTACTGTGGTCGAAAGGAGGCCCAGTTGGCGAAGGTTTCAGCTAAGTACTTCTCGACTCCAACGTGACTGCGTCGGCTTTCAC
TGCGTCCCCTTCAACGTGAGGAGGTGTTCGGTGGACTTGTAGATCCCTGCGCTGCTTATGAACAAGAACTGCTTCACGCCTGAGCT
TTTAGCCCAATCCACCACTGGCCTGACAGTATCCAAATCCTTGCCATTGTTGTCAAGAACAACGTCGAATGTTTCACCTCCGACCA
CAGTCGCAACATCGGCTGGGTTTCCCCACACCGTCTTTCCTCCGCCGCTTACAATTTCGGAGAAACGGCTGAAGGGAGTTTTCTTC
ATTTTGTCAGAAGATTCTTCTCCGACAGTCATAATGGTGACGGCATGGCCGGCGGAGAGAAGCTCTTTGGCAAAGTAAAAGCCAAT
GACGGCGTGACCGCCGCTGTTGGTGTTGACTATAAGCACATTCTTCTTCTCAGCCTTCACGGTGAATTCCTGAGGAGATGATCTTC
GAGAACTCTTCAGAGAGTGTGTGGTGAAGAGAGAAGCAGAAGAAGAAGAAGAGAGAGAGGAAAAGGAAGATGATGATGAGGGAAGA
GAGAAACGGTGGAGAGACGGCGGGGTGAGGGTTAGATTATTGATCGGAATAGCTGTTTTGGATGAGAAAAACAGAGAGGATGATGA
TAAAGCTGCCATGCTTGTTCCCTCACTGCTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878498 hypothetical protein ARALYDRAFT_486816 [Arabidopsis lyrata subsp. lyrata] | 947 | 6e-100 |
| NP_191873 chloroplast stem-loop binding protein-41 [Arabidopsis thaliana] | 940 | 4e-099 |
| AAP87140 mRNA-binding protein precursor [Nicotiana tabacum] | 884 | 1e-092 |
| XP_002306773 predicted protein [Populus trichocarpa] | 880 | 3e-092 |
| ADQ57386 CSP41A-X protein [Silene latifolia] | 870 | 5e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYA9 Uncharacterized protein At3g63140, chloroplastic | 940 | 2e-100 |
| Q9SA52 Uncharacterized protein At1g09340, chloroplastic | 375 | 5e-035 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7X998 MRNA-binding protein (Fragment) | 884 | 8e-093 |
| B9H883 Predicted protein (Fragment) | 880 | 2e-092 |
| A5AWW0 Putative uncharacterized protein | 862 | 3e-090 |
| B9GSN8 Predicted protein | 862 | 3e-090 |
| Q9XEJ6 MRNA binding protein | 859 | 6e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G63140.1 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding | 941 | 1e-101 |
| AT1G09340.1 CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding | 375 | 5e-036 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
