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Information for unigene UN00407

FASTA Sequence
Unigene ID: UN00407Length: 1458 SSR 
GGAAATATACGAGATAGAGAGAGTTGTGTGTAGAGATATAGAGAGAGAGAGTTCCTTTTACTCTCTTCTTTCTCTGCCAATCTGAC
AGAAGAAGAGTTCATTTACTTCACGGGAGTTTCAACCTTTTTGTGAGAACCTGGATGGGTCTTTAGTTCTGTTTCCTAGATCTTGA
AAAATTAAAGATCTTATTACAAACATGTCTCGGGTTCGATTCGCAATCGAGCAAAAAGACAGCACCTTTGCGTACCCACCACCGTT
TTACAGAGACCCGATCCTCCCTCCGCCATCTCCACCACCTCCCTCCGGTAACAGAATCAGCCCGGCGGTTCTCTTCGTAATCGTCA
TCCTAGCCGTCTTGTTCTTCATCTCCGGCCTTCTTCATTTGCTCGTCAGGTTTCTCATCAAGCATCCCTCTCCCGCCTCTGCCTCT
GCTTCGAGGTCTAACAGATACCCGGAGATCTCGACCAGCGACGCTCTTCAAAGACAGCTTCAACAGCTCTTCCATCTCAACGACTC
TGGTCTCGACCAAGCCTTCATCGACGCCTTGCCTGTTTTTCACTACAAAGAAATGGTCGGTGGTGCGTCCAAGGAGGAGCCGTTCG
ACTGCGCGGTTTGTCTATGCGAGTTCACTGAGAAAGATAAGCTGAGGTTGTTGCCCATGTGTAGCCACGCTTTTCATCTTAACTGT
ATTGATACTTGGCTTCAGTCTAACTCCACTTGCCCTCTTTGTCGTGGCACTCTCTTCTCCCCTGGCTTCTCCATGGAGAATCCCGT
GTTTGACTTCGATGATATAAGAGAAGAGGAAGAGCGCGTTGTAGTAGCTGAGAAAGCTACGGAGATTCAAGAGATTGTTGTGGAGA
AAGGGGTTTTGCCGGTGAGGTTAGGGAAGTTCAAGAGGCTTGACAATCTTGGTCAGGGACAAGAAGATCATGTGAGAGAGACTAGT
AGTAGTAATCTTGACGCGAGGAGATGTTTTTCAATGGGTTCGTATCAGTATATACTCGGTAACTCGGAGCTTAAAGTACCCTTTTG
TAATGATAGGCAACTGCGTTTGAAACCTCAGGACAAAGAGTGTCAAGATTCATCATCTGAGGAGAAGAAGATGAGTAGTGTTGTGG
CTAAAGGAGAGAGCTTCTCGGTTTCAAAGATTTGGTTCTGGCCAAAGAAAGATAAGTTCTCTTCAGATGCTCAAAGGAGGTTGCCT
TCTTCATCATCGCTTAACGTTGATGATCTTCCAAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGGTGAAAGGTAGTA
TCGTTAGCTCATTTTTTTTTTCAATCCGGACCATTGATAAGTTTAGGGTTTACTGATTATATCTTGGTGGGGGGTTTGGCAATCAT
CTGTTTTAACATAAATTTATTAAGTTTATAAGAAATTTGTATTGCATCATGGTTGTTAATGATATGAGATTAAAGTTTAACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_198841 RING-H2 finger protein ATL46 [Arabidopsis thaliana]15605e-171
XP_002870718 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]12837e-139
XP_002517366 ring finger protein, putative [Ricinus communis]11233e-120
ACU23678 unknown [Glycine max]9566e-101
ACI42847 RING finger protein [Glycine max]9541e-100

Swiss-Prot top hits (Blast detail)Scoree value
Q9FL07 RING-H2 finger protein ATL5I15602e-172
Q8GW38 RING-H2 finger protein ATL1D7539e-079
Q940Q4 RING-H2 finger protein ATL4K4868e-048
Q9ZV53 Putative RING-H2 finger protein ATL2C4643e-045
Q7X843 RING-H2 finger protein ATL3I4033e-038

TrEMBL top hits (Blast detail)Scoree value
B9RUC1 Ring finger protein, putative11232e-120
B9GH92 Predicted protein10229e-109
C6TL86 Putative uncharacterized protein9564e-101
C6EUD3 RING finger protein9547e-101
A5ATC1 Putative uncharacterized protein9539e-101

Arabidopsis top hits (Blast detail)Scoree value
AT5G40250.1 zinc finger (C3HC4-type RING finger) family protein15612e-173
AT1G23980.1 zinc finger (C3HC4-type RING finger) family protein7538e-080
AT4G30400.1 zinc finger (C3HC4-type RING finger) family protein4867e-049
AT2G18650.1 MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding4642e-046
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein4033e-039

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information