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Information for unigene UN00407
| FASTA Sequence |
| Unigene ID: UN00407 | Length: 1458 |
SSR | | GGAAATATACGAGATAGAGAGAGTTGTGTGTAGAGATATAGAGAGAGAGAGTTCCTTTTACTCTCTTCTTTCTCTGCCAATCTGAC
AGAAGAAGAGTTCATTTACTTCACGGGAGTTTCAACCTTTTTGTGAGAACCTGGATGGGTCTTTAGTTCTGTTTCCTAGATCTTGA
AAAATTAAAGATCTTATTACAAACATGTCTCGGGTTCGATTCGCAATCGAGCAAAAAGACAGCACCTTTGCGTACCCACCACCGTT
TTACAGAGACCCGATCCTCCCTCCGCCATCTCCACCACCTCCCTCCGGTAACAGAATCAGCCCGGCGGTTCTCTTCGTAATCGTCA
TCCTAGCCGTCTTGTTCTTCATCTCCGGCCTTCTTCATTTGCTCGTCAGGTTTCTCATCAAGCATCCCTCTCCCGCCTCTGCCTCT
GCTTCGAGGTCTAACAGATACCCGGAGATCTCGACCAGCGACGCTCTTCAAAGACAGCTTCAACAGCTCTTCCATCTCAACGACTC
TGGTCTCGACCAAGCCTTCATCGACGCCTTGCCTGTTTTTCACTACAAAGAAATGGTCGGTGGTGCGTCCAAGGAGGAGCCGTTCG
ACTGCGCGGTTTGTCTATGCGAGTTCACTGAGAAAGATAAGCTGAGGTTGTTGCCCATGTGTAGCCACGCTTTTCATCTTAACTGT
ATTGATACTTGGCTTCAGTCTAACTCCACTTGCCCTCTTTGTCGTGGCACTCTCTTCTCCCCTGGCTTCTCCATGGAGAATCCCGT
GTTTGACTTCGATGATATAAGAGAAGAGGAAGAGCGCGTTGTAGTAGCTGAGAAAGCTACGGAGATTCAAGAGATTGTTGTGGAGA
AAGGGGTTTTGCCGGTGAGGTTAGGGAAGTTCAAGAGGCTTGACAATCTTGGTCAGGGACAAGAAGATCATGTGAGAGAGACTAGT
AGTAGTAATCTTGACGCGAGGAGATGTTTTTCAATGGGTTCGTATCAGTATATACTCGGTAACTCGGAGCTTAAAGTACCCTTTTG
TAATGATAGGCAACTGCGTTTGAAACCTCAGGACAAAGAGTGTCAAGATTCATCATCTGAGGAGAAGAAGATGAGTAGTGTTGTGG
CTAAAGGAGAGAGCTTCTCGGTTTCAAAGATTTGGTTCTGGCCAAAGAAAGATAAGTTCTCTTCAGATGCTCAAAGGAGGTTGCCT
TCTTCATCATCGCTTAACGTTGATGATCTTCCAAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGGTGAAAGGTAGTA
TCGTTAGCTCATTTTTTTTTTCAATCCGGACCATTGATAAGTTTAGGGTTTACTGATTATATCTTGGTGGGGGGTTTGGCAATCAT
CTGTTTTAACATAAATTTATTAAGTTTATAAGAAATTTGTATTGCATCATGGTTGTTAATGATATGAGATTAAAGTTTAACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198841 RING-H2 finger protein ATL46 [Arabidopsis thaliana] | 1560 | 5e-171 |
| XP_002870718 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1283 | 7e-139 |
| XP_002517366 ring finger protein, putative [Ricinus communis] | 1123 | 3e-120 |
| ACU23678 unknown [Glycine max] | 956 | 6e-101 |
| ACI42847 RING finger protein [Glycine max] | 954 | 1e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FL07 RING-H2 finger protein ATL5I | 1560 | 2e-172 |
| Q8GW38 RING-H2 finger protein ATL1D | 753 | 9e-079 |
| Q940Q4 RING-H2 finger protein ATL4K | 486 | 8e-048 |
| Q9ZV53 Putative RING-H2 finger protein ATL2C | 464 | 3e-045 |
| Q7X843 RING-H2 finger protein ATL3I | 403 | 3e-038 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RUC1 Ring finger protein, putative | 1123 | 2e-120 |
| B9GH92 Predicted protein | 1022 | 9e-109 |
| C6TL86 Putative uncharacterized protein | 956 | 4e-101 |
| C6EUD3 RING finger protein | 954 | 7e-101 |
| A5ATC1 Putative uncharacterized protein | 953 | 9e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40250.1 zinc finger (C3HC4-type RING finger) family protein | 1561 | 2e-173 |
| AT1G23980.1 zinc finger (C3HC4-type RING finger) family protein | 753 | 8e-080 |
| AT4G30400.1 zinc finger (C3HC4-type RING finger) family protein | 486 | 7e-049 |
| AT2G18650.1 MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding | 464 | 2e-046 |
| AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | 403 | 3e-039 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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