Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN00543

FASTA Sequence
Unigene ID: UN00543Length: 886 SSR 
GGATTGTTTTCTGTGCTCGACTAACTCCATTAGCTCTCTAATCTCTCTCTCTCTCTCTCTCTATCGCCTCATCTCAGATTTTGACT
TCGCGATGGGAGCCGGCGGCAACCTGGAGGCGTCGATAGATCGGCTCCTGAATGAGGAGAAGCAGATGAGACTCGCGGAGAACGTC
GCCGGTACGAGGAAAGCGGCTACTGAGATTCTGCAGCTCTGTTTCGAAGCCAAGGACTGGAAACTTCTCAATGAGCAGATTCTCAA
TCTCTCGAAGAAGCGTGGTCAGCTTAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACA
TAGAAACTCGGATTGAGCTTATCAAGACGCTGAACAATGTTTCTGCTGGAAAGATATATGTTGAAATTGAGAGGGCTCGGCTCACA
AGGAAGCTTGCTAAGATTAAGGAAGACCAGGGTCAGATTGCTGAGGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGG
CGCTATGGCAAAAACTGAGAAAATTGCATTTATACTTGAACAAGTCCGCTTGTGCTTGGATCGTCAAGATTATGTTCGTGCGCAAA
TCTTGTCTAGGAAGATCAATCCTAGAGTTTTCGATGCAGATACAAAGAAAGATAAGAAAAAACCGAAGGAAGGTGAGAACATTGTA
GAGGAGGCTCCTGCTGATATACCTACTTTGTTGGAGCTTAAGAGAATTTACTATGAGCTAATGATTCGGTATTATTCTCATAACAA
TGAATACCTTGAGATTTGCCGTAGCTACAAGCGATATATGACATCCCTTCTGTAAAAGAAACCCAGAGCAGTGGATTCTAGTCCTG
AGAAGATCTGCTGGTTCTTGGTCTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873430 EMB2107 [Arabidopsis lyrata subsp. lyrata]11723e-126
NP_196552 26S proteasome regulatory subunit N5 [Arabidopsis thaliana]11713e-126
NP_001119202 26S proteasome regulatory subunit N5 [Arabidopsis thaliana]11713e-126
NP_974758 26S proteasome regulatory subunit N5 [Arabidopsis thaliana]11652e-125
XP_002866633 hypothetical protein ARALYDRAFT_496691 [Arabidopsis lyrata subsp. lyrata]11311e-121

Swiss-Prot top hits (Blast detail)Scoree value
Q2KJ25 26S proteasome non-ATPase regulatory subunit 124864e-048
O00232 26S proteasome non-ATPase regulatory subunit 124855e-048
Q5RBI3 26S proteasome non-ATPase regulatory subunit 124855e-048
Q54UJ0 26S proteasome non-ATPase regulatory subunit 124722e-046
Q9D8W5 26S proteasome non-ATPase regulatory subunit 124722e-046

TrEMBL top hits (Blast detail)Scoree value
B3H6B0 Uncharacterized protein At5g09900.311712e-126
Q9FIB6 26S proteasome p55 protein-like11712e-126
Q3E9J1 Putative uncharacterized protein At5g09900.211651e-125
Q9FGF7 Proteasome regulatory subunit-like11183e-120
Q8VWK0 26S proteasome subunit RPN5b11041e-118

Arabidopsis top hits (Blast detail)Scoree value
AT5G09900.1 EMB2107 (EMBRYO DEFECTIVE 2107)11711e-128
AT5G09900.3 EMB2107 (EMBRYO DEFECTIVE 2107)11711e-128
AT5G09900.2 EMB2107 (EMBRYO DEFECTIVE 2107)11657e-128
AT5G64760.2 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)11065e-121
AT5G64760.1 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)11048e-121

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
61  33%

Unigene MembersMember information