RadishBase

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Information for unigene UN00724

FASTA Sequence

Unigene ID: UN00724	Length: 1222	SSR
GGGCGTTACGTCAATTTGTAGAAGCAATCGTTTTCTCCAATTTTTCGAAAAACATCATCCTTCGAAGCTCCGAAGCTCTCTCTCCT CCTCCTCCGGCAATCTCCGTTATCTCTTCCGGTTTTTGAATTTGATCGATCGAATGGGGAAAATCAAGAAAGTGAATCGTAGGAAT CGCGTTGCTGCTCCTTACACATCAGCACCGTCTTGTTGCAAGAAAGAATGGGCAGGCTCGACCTGTCCAGTATGTTTGGAGTCTCC GCACAACGCTGTTCTTCTCCTGTGTTCATCCTATCACAAAGGATGCCGTCCTTACATGTGCGCGACGAGCAGCCGTTTCGCCAACT GTCTTGACCAGTACAAGAAGTCGTACGGTAACGAAGAAGACTCGGAGCAGCCTCAGAAGCTTCTGTGTCCGCTATGCAGAGGTCAG GTGAAAGGCTGGACTGTCGTGGAAGACGCGCGTTTGCATTTCAACTCCAAGCGAAGGACCTGTATGCAGGAGAAGTGTTCCTTTGT GGGGAACTTCAAGAAGTTCAAGAAGCACATGAAGGAGAAGCACCCGGATGCTTGTCCTAGGGCTATTGATCCGGCTCTTGAGACCA AATGGAAGAGGCTGGAGAGGGAGAGAGACAGAAGAGACGTGATAAGCACGATCATGTCGTCGATACCAGGTGCTGTTGTGTTGGGG GGATTATGTCATAGAGCCTCGTAACGGAGGTGTTTATGATGAAGAAGATGATGATGATTACAGCTCAGATGATGATGATGATATGA GCAACAACGGTGTACTGGATCTTGATTCATGGCAAGGACAAGGCCATCACATTCGGTTTATAGATATGGATGCAAGCGACTTTGCA TCGTCTTCCCGTTCCCATGCTTCTCCAAGCAGTTTGCTCTTCCCAAGGAACCAGAGAGGCGGCAATAGAGATCGGCAACTATGATT TAACACCGAAGCAAATTCATGTTCAGTCTCCTCTGCATATAATCTCAAACTCTCTCCTGCGGTACAAATTGGCTTCAGACTTGCAG GAGCAGTATAAAAGGCTAACATGACTAAGACAACTAGCCATACAGGAAATTGATTATTAAAAACACTCGCAGTCTCTTTTTATTTA TTTTCATGTAAATTATGTATTCTCTGTAATTGTATTATTGTTTCAGCATTGTTGTACCTTTTCTCAGTTCTCGTTTCTCTGTATTG ATTTACTTTCATCTTCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_974163 uncharacterized protein [Arabidopsis thaliana]	849	1e-088
NP_177900 uncharacterized protein [Arabidopsis thaliana]	849	1e-088
XP_002889159 hypothetical protein ARALYDRAFT_476943 [Arabidopsis lyrata subsp. lyrata]	831	1e-086
NP_192586 uncharacterized protein [Arabidopsis thaliana]	636	6e-064
XP_002874536 hypothetical protein ARALYDRAFT_489753 [Arabidopsis lyrata subsp. lyrata]	631	2e-063

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q84K51 At1g77770	849	8e-089
Q9CA17 Putative uncharacterized protein T32E8.10	849	8e-089
Q9M0T4 AT4G08460 protein	636	4e-064
Q2V4E1 Putative uncharacterized protein At1g68140.2	521	9e-051
Q9C9X8 Putative uncharacterized protein At1g68140	521	9e-051

Arabidopsis top hits (Blast detail)	Score	e value
AT1G77770.1 protein binding / zinc ion binding	849	4e-091
AT1G77770.2 protein binding / zinc ion binding	849	4e-091
AT4G08460.1 protein binding / zinc ion binding	636	2e-066
AT4G08460.2 protein binding / zinc ion binding	636	2e-066
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	521	5e-053

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			67%


9	1			33%

Unigene Members	Member information