 |
Information for unigene UN00773
| FASTA Sequence |
| Unigene ID: UN00773 | Length: 779 |
SSR | | GGAAACCAACCTTCTGAGATTTCGCCGGAACGAGAGAAGAGAGAGAGAGAGATCTAACGGTCGAGATGTTCCTTCGCGCAATCGGA
CGGCCACTACTGGCTAAAGTGAAGCAGACGACGGGGATCGTCGGCCTCGACGTCGTGCCGAACGCGAGGGCGGTGCTGATCGATCT
CTACAGCAAAACCCTAAAGGAGATCCAAGCCGTGCCGGAGGACGAAGGATACCGCAAAGCGGTGGAATCGTTCACGCGCCACCGTC
TCAGCGTGTGCAAAGAAGAGGAAGACTGGGAGGCGATCGAGAAGCGTCTCGGCTGCGGTCAAGTCGAGGAGCTCATCGAAGAGGCG
CAGGACGAGCTCACGCTCATCGTAAGATGATCGAATGGGACCCTTGGGGTGTTCCAGATGACTACGAGTGTGAAGTAATTGAGAAC
GATGCACCGATTCCAAAGCACGTTCCTCAACACCGACCTGGTCCTCTTCCTGAGGATTTCTACAGAACCCTTGAAGGTCTGATTTC
AGAGTCCAAAGCAAAAATCCCAGCTGCTGCTGCTGCTGCTACTGCCTCCACTGATCCGCAGTTGAAGGAGTAACTTCCAGTTTTTT
CACATTGTTTGTTTGTGTACTTGTTTGCTTTGTTTGGCTACTGTTCAGAGACAGCGAGCCTCTGAAATAAACTGGTTTATAATAAT
CTTTGAAAACTAGAACAATGTCACTCGTTTCATAAATGTTTTTTTATCTTTCTTCTCAAAGAACCTATGATAATACAAATGATGTT
TCATC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864198 hypothetical protein ARALYDRAFT_495348 [Arabidopsis lyrata subsp. lyrata] | 488 | 4e-047 |
| NP_568778 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [Arabidopsis thaliana] | 482 | 2e-046 |
| XP_002327504 predicted protein [Populus trichocarpa] | 448 | 2e-042 |
| XP_002513634 NADH dehydrogenase, putative [Ricinus communis] | 448 | 2e-042 |
| ACU16020 unknown [Glycine max] | 447 | 2e-042 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FLX7 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial | 482 | 9e-048 |
| Q559Z4 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 | 195 | 2e-014 |
| Q18359 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 | 169 | 2e-011 |
| P0CB99 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 | 155 | 8e-010 |
| P80266 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (Fragment) | 145 | 1e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9MX65 Predicted protein | 448 | 1e-042 |
| B9RIR5 NADH dehydrogenase, putative | 448 | 1e-042 |
| C6T2Y2 Putative uncharacterized protein | 447 | 2e-042 |
| A9P8K8 Predicted protein | 443 | 5e-042 |
| Q8W544 NADH-ubiquinone oxidoreductase (Fragment) | 382 | 6e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G52840.1 NADH-ubiquinone oxidoreductase-related | 482 | 9e-049 |
| AT4G28005.1 LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); Has 20 Blast hits to 20 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 164 | 6e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
