RadishBase

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Information for unigene UN00779

FASTA Sequence

Unigene ID: UN00779	Length: 1095		SNP
GAATCATGAGAACGCAACTGGTTCAGAATGTAGCGACCAGATTGATGATGAAGATGATCCAAAGTGTAAGAAAAAGACAGGAAAAC ATACTCAAGCTAAGAACCTGCATGCTGAGTGACGGAGGAGAAAGAAGCTAAACGATAGGCTTTACGCTCTCAGGTCGCTTGTTCCC CGGATAACTAAGTTGGATAGGGCATCCATTTTGGGTGATGCTATCAACTACGTTAAGGAGTTGCAGAATGAGGCAAAGGAGCTTCA AGACGAGCTTGAAGAGAATTCAGAGACTGAGGATGGATCTAATAGGCAGCAAGGAGGGATGAGTCTGAACGGGACAGTGCTCACTG GGTTTCACCAGGGGCTTTCGTGTAACTCGAATCTTCCTGACATGAAACAAGATGTTGATCTTGAGAACTGCAATGATAAAGGACAA GAGATGGAGCCGCAAGTGGACGTGGCTCAGCTAGATGGAAGAGAGTTCTTCGTAAAGGTGATTTGTGAATACAAACCAGGAGGCTT CACAAGGCTAATGGAGGCACTTGATTCTCTGGGACTTGAGGTCACAAATGCTAACACGACTCGTTTCCTCAGTCTTGTCTCCAATG TCTTTAAAGTCGAGAAAAACGATAGCGAGATGGTGCCAGCTGAACATGTGAGGAACTCGTTGCTGGAAATAACCAGGAACACATCT AGAGGATGGCATGATGATCAGATGGCAACTGGTTCCATGCAAAACGAAAAGAACGAAGTTGACTATCAACACTATAACGATCACCA CCATCAAGGCGTTGTTCATCAACTACATGATCATCAGATGAACCACCAGAGCGCTCACCATCACCACCAACACATCAACCATTACC AAAACCAATAAGGAGCATGTTCCCAGAGCTATCAAGATGTGTGTTCTTTACATGAGAAAGAAACATTAAAATCTGCGCAAAATACA CTTCAAAGGTCTTTTTCCATTTCATCAAATAACAAAAAAAGGAATGACAGTTCCAGAGATATTCCTGTATCCAATAATACTATAAA ACCAAAGGACTCCGGTAGATTCACATGGAACATATACTATAAAAAGCAAAACAACTTCACTCG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAD54298 bHLH transcription factor [Brassica napus]	1441	2e-157
NP_179283 transcription factor ABORTED MICROSPORES [Arabidopsis thaliana]	1306	1e-141
AAC64222 bHLH transcription factor [Arabidopsis thaliana]	1306	1e-141
XP_002884023 hypothetical protein ARALYDRAFT_480571 [Arabidopsis lyrata subsp. lyrata]	1302	3e-141
BAH30387 hypothetical protein [Arabidopsis thaliana]	851	6e-089

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZVX2 Transcription factor ABORTED MICROSPORES	1306	4e-143
Q9LPW3 Transcription factor SCREAM2	208	9e-016
Q9LSE2 Transcription factor ICE1	206	2e-015
Q9LSL1 Transcription factor bHLH93	197	2e-014
Q9LXA9 Transcription factor bHLH61	196	2e-014

TrEMBL top hits (Blast detail)	Score	e value
Q84WX1 BHLH transcription factor	1441	2e-157
C0SV46 Putative uncharacterized protein At2g16910 (Fragment)	851	4e-089
B9S5L4 Putative uncharacterized protein	684	9e-070
B9S5L3 Transcription factor, putative	659	7e-067
C5XSZ6 Putative uncharacterized protein Sb04g001650	448	2e-042

Arabidopsis top hits (Blast detail)	Score	e value
AT2G16910.1 AMS (ABORTED MICROSPORES); DNA binding / transcription factor	1307	3e-144
AT1G12860.1 SCRM2 (SCREAM 2); DNA binding / transcription factor	208	8e-017
AT3G26744.1 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	206	1e-016
AT3G26744.2 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	206	1e-016
AT3G26744.4 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	206	1e-016

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	3			38%


11	2			25%


9	2			25%


10	1			13%

Unigene Members	Member information