RadishBase

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Information for unigene UN00795

FASTA Sequence

Unigene ID: UN00795	Length: 772	SSR
GAGTCCACGGCGTCTTCTCGATTTAATTTAAAAAAAAAGGATCCAAACCAGAGAGAGAGAGATATGGAAGGAGGAGCTGGTGTCTA CAATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCCGCCATTGTCAAAGCTCTCACCTCCGATGTTGCAG AGTTTTACCAGCAATGCGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAATGGGAAGTGAACTTACCAGCA GAAGAAGTGCCTCCGGAGCTTCCAGAGCCAGCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCTTTCTCT TGTTGCTATCCACAGTGACACTTGGTTGCTCTCTGTCTCTTTTTACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAAC GCTTGTTTGATATGATCAATGGGGTTCCTACCATATTTTAAGTCGTCACTGGAAATATGAAAAAGCAAACTAAGGATAAGTCCTCT GCTTCGAATCGAAATGGCAGTCTATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCACAGGCCATGCAGGCAAA CAATGAGGAAGATGGATCCGAGGAAGAGGATGAGGATGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACGTGATGGTAATGG TACTGATGATTTCTGGATCTGCTGTGACGTTGTGAGTGGGGTGGGGAAGTGTGTGAAGAAACTCCAGCTAGAGCTGAGCATATC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABA18096 PHD finger/nucleic acid binding protein [Olimarabidopsis pumila]	911	4e-096
XP_002877256 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	886	3e-093
NP_189865 protein alfin-like 3 [Arabidopsis thaliana]	870	2e-091
XP_002873999 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	856	8e-090
NP_197551 alfin-like 5 protein [Arabidopsis thaliana]	817	3e-085

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	752	5e-079

TrEMBL top hits (Blast detail)	Score	e value
Q287W1 PHD finger/nucleic acid binding protein	911	2e-096
Q9M2B4 Nucleic acid binding protein-like	870	1e-091
Q5XEM9 At5g20510	817	2e-085
B9IKC9 Predicted protein	813	6e-085
B9HD31 Predicted protein	811	1e-084

Arabidopsis top hits (Blast detail)	Score	e value
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	870	9e-094
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	817	1e-087
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	752	4e-080
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	681	7e-072
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	672	8e-071

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			50%


9	1			50%

Unigene Members	Member information