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Information for unigene UN00848

FASTA Sequence
Unigene ID: UN00848Length: 750 SSR 
GGAGGTAACCGGTAACAAGCATCTCTTTCTAAACTCACGCTCATCCTTTGCTCTCTCCGATCGTCTTTACCTTTTGATTCTTCTTC
TTCTTCTTCTTCTTCTTTTTTTCCGCTAGGTTTCTCTCAAACGAACAGATCCTCCTTCGTCTCAAAGTTACCTTGTGCGATGAAGA
CAGCTAAGGGGAAAGGTAAAGCTAAGACCACTAAGGAAGCCTTGAAGCCAGTTGATGACAGAAAGGTGGGGAAGAGGAAGGCACCG
GCTGAGAAGCCTAGCAAGAGGGAGACTCGTAGAGAGAAGAAAGCCAAGAAGGACCCCAACAAACCCAAGAGAGCTCCTAGTGCTTT
CTTTGTCTTCTTAGAAGATTTTAGGCAAACGTTCAAGAAAGAGAATCCAGATGTGAAGGCTGTCTCTGCTGTTGGGAAAGCAGGAG
GACAGAAATGGAAGTCAATGTCTCAGGCTGAAAAAGCTCCATATGAAGAGAAAGCTGCAAAGAGGAAAGCTGAATACGAAAAGCTT
ATGGATGCATACAACAAAAGCATGGAGGAAGGGAGTGATGAATCTGAAAATTCTTTATCTGAAGTGAATGATGAAGATGAAGCTAG
TGAAGAGGAAGAGAAGATAGAGAAGGGAAAGGCAGGTGAGGATGACGAAGATGATGATGATGAAGATGAAGATGACGAGGACGATG
AAGAAGACTAAACTGGAGATAGAGGTCAGAGTTTGGATCTCGAGGATAACTACAGGTTCAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33790 unnamed protein product [Thellungiella halophila]8057e-084
NP_190756 high mobility group protein B1 [Arabidopsis thaliana]7941e-082
NP_974413 high mobility group protein B1 [Arabidopsis thaliana]7762e-080
XP_002877829 hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp. lyrata]7582e-078
NP_001190062 high mobility group protein B1 [Arabidopsis thaliana]7072e-072

Swiss-Prot top hits (Blast detail)Scoree value
P26585 HMG1/2-like protein3672e-034
P40619 HMG1/2-like protein3636e-034
P40621 HMG1/2-like protein3564e-033
P27347 DNA-binding protein MNB1B3546e-033
P40620 HMG1/2-like protein3538e-033

TrEMBL top hits (Blast detail)Scoree value
O49595 At3g51880/ORF137949e-083
Q3EAL6 AT3G51880 protein7761e-080
C6SVP1 Putative uncharacterized protein5762e-057
C6SXC8 Putative uncharacterized protein5716e-057
A5BH86 Putative uncharacterized protein5672e-056

Arabidopsis top hits (Blast detail)Scoree value
AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7945e-085
AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7945e-085
AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor7767e-083
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3797e-037
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor3789e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  33%
 
92  67%

Unigene MembersMember information