Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN00881

FASTA Sequence
Unigene ID: UN00881Length: 947 SSR 
GCAACCACTACGGCTCTGGGAATCAGACACGATGCTATCCTATCTACCATCTACCGTAATGGGAATTGGCAGCTCCCCTCTCCTCG
ATCAGAACCTCAACTAAACCTACAAGTCTATCTCACTACCATTGCTTTGACGCTAGAGGAGGACAAATTTGTATGGGCTCCAGACG
GGAAAGAACTCTCCACTTACTCCACAGGTCAAGTGTACAACCTCATCAAGACTCATCAGCCGGTGGTTCCTTGGGCAGCCTGCGTT
TGGTCGCCAAGAGGTATACCTAAGCACAATTTTCTCACTTGGTTAGTGGTATTAAATCGATGTCCTACAAAGGATCGTATTCTCGG
ATGGGGACTTACAACTAGCCCTCTTTGCCTTCTCTGCAACTCTGCAAATGAGTCAAGAGATCACCTCTACTTCACATGTTCCTTTT
CGGCTTCAATATGGGGATCACTAGCCATGCGAGCTCGAAGCACTCCTATTACTTCCTGGCCCCAGGTTATCAACCATATGCAGCAG
CTAACTGGACCGAAACACCTCCGTATCTTAGCATTATTGGCTTGGCAATCGGCAATTTACTTCATCTGGATGGAGAGAAACAGCCG
CCTTCACCGTCAGCAATTCCGTTCCTCAGATTTGATTGTTTCTGCCGCTACATCACTGATCAAGAACAGGATCTCCAGCCTACGAT
TATCGTCTCCTTCATTATCTTCCAAGATGATGCAGGTGTGGTTAAGCCCATAGCATATCTCGCCACTGATACCATTTACTCTGCTC
TAACTGAAGAAGACGCTTCGTGATCATCGATCTTTTCCAATTGCCTTTTGGGCTTCTTTTTAAATTGGGTCTTCCCCTTTTAATTG
TAAGGTTATTATTAGGCTACTGCCAACCAAACTGTCCATTGGGCTTCCTGCAGTTTCATATATATATATATATAAAAGCCCTTTCA
C

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002863741 hypothetical protein ARALYDRAFT_917455 [Arabidopsis lyrata subsp. lyrata]4196e-039
NP_197389 RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]3731e-033
XP_002877469 predicted protein [Arabidopsis lyrata subsp. lyrata]3443e-030
AAD26953 putative non-LTR retrolelement reverse transcriptase [Arabidopsis thaliana]3416e-030
NP_567266 RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Arabidopsis thaliana]3264e-028

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q3E9D7 Uncharacterized protein At5g18880.13739e-034
Q9XIH8 Putative non-LTR retrolelement reverse transcriptase3414e-030
A0MF55 Putative uncharacterized protein (Fragment)3262e-028
Q1PEB6 Putative uncharacterized protein3262e-028
Q9S9V5 AT4g04650 protein3262e-028

Arabidopsis top hits (Blast detail)Scoree value
AT5G18880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3735e-036
AT4G04650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: stromule; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43730.1); Has 608 Blast hits to 598 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3261e-030
AT1G43730.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 562 Blast hits to 549 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3029e-028
AT1G60720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2939e-027
AT1G33710.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60720.1); Has 337 Blast hits to 335 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2696e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information