RadishBase

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Information for unigene UN00890

FASTA Sequence

Unigene ID: UN00890	Length: 906	SSR
CCTCCACTCTCGCCGTCAAAACTTTCCACACCGCCGCGTCAGGGTTATGGACCCAATCGTCTTCGTCGTCTATTCTATCTTCTTCC CGAGTGATAACCACTGTCTCATCATCCATGGCGGCTTCTGGAGGCGAAGGAGCTGTTTTCAATCTGTCCGATTCTAGCCTTCTCAA AATCGTTAAAGGCGACATCACGAAATGGTCCGTCGATGCATCCTCAGATGCTATTGTGAATCCAGCAAATGAGAGAATGTTAGGTG GTGGTGGTGGTGATGGAGCAATACATAGAGCTGCTGGGCCACAGCTTAGAGCAGCGTGCTATGAGGTCCCTGAAGCTCGTCCTGGA GTCCGTTGTCCATTAGGGGAAGCAAGAATCACTCCGGGTTTTAACTTGCCTGCATCCCGTGTGATTCACACTGTTGGACCTATCTA TGACTCAGCTGTCAATCCTAAATAATCCCCCACCAATTCTTACAGAAATAGTTTGAGAGTGGCTAAGGAATACAACATCAAGTACA TTGCATTTCCTGCCATATCTTGTGGGATTTACGGATATCCTTTTGATGAAGCTGCTGTGATCGGTATATCGACGATCAAAGAGTTC GCCAGTGACTTTAAAGAGGTGCATTTTGTTTTGTCCGCTGACGATATCTATAGCGTGTGGGTAAACAAGGCAACAGAGGTGCTACA AAAAGCTTAAGATTCCATTGCATGCTAGCCTAAGTAAACATGAATTGGAAAAATTGCTATGTTAACGTTGTGTGATGAGAGACGTG TGATGATAACTCCGCAAAGGAAACGTTTGCTATTTGTGTTGTGTGATGCGTGCCTTGTGATTTTGACCGTAATGGTTTTGCTTTTT TTTTTAAGGATTCAGCATCATTGTAAAAATGGTTTAACGTTACTGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_030605 appr-1-p processing enzyme family protein [Arabidopsis thaliana]	938	4e-099
AAK93649 unknown protein [Arabidopsis thaliana]	930	3e-098
XP_002881729 hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata]	903	4e-095
AAB87596 expressed protein [Arabidopsis thaliana]	898	2e-094
XP_002319871 predicted protein [Populus trichocarpa]	731	4e-075

Swiss-Prot top hits (Blast detail)	Score	e value
Q8P5Z8 UPF0189 protein XCC3184	380	8e-036
Q8PHB6 UPF0189 protein XAC3343	379	1e-035
Q87JZ5 UPF0189 protein VPA0103	377	2e-035
Q8KAE4 UPF0189 protein CT2219	350	2e-032
Q97AU0 UPF0189 protein TV0719	337	8e-031

TrEMBL top hits (Blast detail)	Score	e value
Q8H114 Putative uncharacterized protein At2g40600	938	2e-099
Q949P6 Putative uncharacterized protein At2g40600 (Fragment)	930	2e-098
O22875 Expressed protein	898	1e-094
B9I886 Predicted protein	731	2e-075
B9S4E3 Protein LRP16, putative	719	6e-074

Arabidopsis top hits (Blast detail)	Score	e value
AT2G40600.1 appr-1-p processing enzyme family protein	939	1e-101
AT1G69340.1 appr-1-p processing enzyme family protein	169	2e-012

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			67%


6	1			33%

Unigene Members	Member information