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Information for unigene UN00964
| FASTA Sequence |
| Unigene ID: UN00964 | Length: 902 |
SSR | | CAGTTGAGAAATGGTTTATGACAATGCAATCTTACAATATTATTGTTTGCACATGATCACAAAAAAAGAGAGGACATTAACCAATC
CACAGTAACACAAAAGGCAAAAAAAAAAAAAGAGAGAGAGAGACAAACAACATTAGAAACACAGCAACTTAACAAGGAGGAAACTC
AAAACTTGTAGACACAAGTTCCATCGTCACTTCTAGCTGTTGGATCAAAGTTTTCGGCTTGAGGATCAGTACACCCTTCTGGAACA
GGAACGTTCACTTGCTGTGCTGCTTTCCCATAGAAAGTTCCGCGGCCAATGGCGTCAGCGTTTGCGTCTCCCAACGCAGCCTCGTT
AAGGTATTGGTCAGCAAGTTGGACTCTCTTGACGTTCTCTTGCTCCATCACAAGCATGTTTCCATACTCCATAAGCTTCTCAAGAG
TCATCTTCGGTTGCTCGAACACCGGAGGAGCTTCCCTTGAGTTCACCAGCCTCTTGCTTATCTTCTCCACTCCAAGTCCCTCAACG
AACTTCCCATAGGAGCTTGGAAGACAGAGTCTACCATACCTTTGCCTCTGGTGATGTCTTGTTGATCATCAGACACGTCGTAGGCA
AGTCCCCTCCATCTGTCACCATCGGTCTGTTTGTCTTCTTTCACAGCAACCACTTTGAATGATCCGTTGCTCTTCTTGTTGTTGCT
CTGTGTGAATCTCGATGCGGTTACAACTTTCTTTCCCAAGAAGGTCGTAGCTGGGACTGAAGCAGCTCCTGCTCCTGACCCGTTCA
AGCTCAACGGAGCTCTGTTGATGGCACCGATGGTGGAAACTGCGGTGGCCATTTCTCACGAGTGTGCGTCACACAAGAAGCTGAGA
GAGAGAGAGAGATTCTGATCGGAGAAGATGGATAGATGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881673 hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp. lyrata] | 551 | 3e-054 |
| NP_565913 ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis thaliana] | 543 | 2e-053 |
| AAK96483 At2g39730/T5I7.3 [Arabidopsis thaliana] | 543 | 2e-053 |
| AAN18180 At2g39730/T5I7.3 [Arabidopsis thaliana] | 543 | 2e-053 |
| BAF01986 Rubisco activase [Arabidopsis thaliana] | 543 | 2e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P10896 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | 543 | 1e-054 |
| P10871 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | 470 | 3e-046 |
| P93431 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | 462 | 2e-045 |
| Q7X9A0 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic | 461 | 3e-045 |
| Q40073 Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic | 436 | 3e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WLM1 Rubisco activase (Fragment) | 543 | 2e-053 |
| Q8H172 At2g39730/T5I7.3 | 543 | 2e-053 |
| Q941B7 At2g39730/T5I7.3 | 543 | 2e-053 |
| B9SDY7 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast, putative | 507 | 2e-049 |
| Q19RP2 Ribulose-1,5-bisphosphate carboxylase/oxygenase activase (Fragment) | 499 | 2e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G39730.1 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator | 544 | 7e-056 |
| AT2G39730.2 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator | 459 | 5e-046 |
| AT2G39730.3 RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator | 459 | 5e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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