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Information for unigene UN00965
| FASTA Sequence |
| Unigene ID: UN00965 | Length: 1480 |
SSR | | ACAATAACTCGACAAGTCTGTGTATAAGATAAGATCCAACAGTACATAGTACGTGATAACTGTTAAACATACCAAACCTACTACAA
CGCAAAACTGTTCCTTTTGAGATTTGTAACATTTAAATTAGCTTTTGTTTTTTTTTTAAATCAGTGTCTTTGTAATGTTTCTGTAT
ACTTATGGTGAACAAATCTGGTGCTTCCTTTGCTTTTTTTCTCACTCACTTTTCACCAATGAACGAACACCATATCTTCATAGTCA
AACTTCATCATCATCATCAAGGTAGTGTCCGTGTTCTTCCGAACGGTTCTTCAGTCTCTGGAATATCTCATCTAGAGACTGCGGCC
TTGACGAAGGCATCACTCCTGTGCTTGTGCTAGTTATCGTTGTTGCTGTTTCTGGACCTTGCCTTAGTGGAAGAAACTTCTTGGTA
GCTACGTTCTCTTTAAAACTCTGGATCCCTTGTTTCATGTCCCTCCACGTCGAAGCCAACCGAGAAGAGGGCACCTCTCCTCCTGC
ACCACCACTACTTGGACCCGAACTCTCTGTTTCGAGTAACGACACTTTCGCTGAAGCCATCTTCTCTGGCTTTGGAGATGGAGAGT
GTCTGTTCTGTTGCTCTCTAATGGCTGCGTATTTGTTAGTGATTGCTCTCTGGCTGATCCGTATCTACGGGACATGTCGTCGTTTG
ATGTGTCCATGTCATAGCTTGATGACGACATCTTCATTTCAAGTGAAGAGTTTCCAGGGAAGTTGCTTCGTGGTTCAATGTCATCA
GCATCGTGAAGTTTCCTTGCTAGTGGAAGAACATGCTCGCCTACCTTTTGTCCTTCTTCAAGCCATGTTCGTTCTTTCTTCAAAAT
CATCAACCCTGAAGGATCAAAGCCGTCCATGTCGTCGGTCTCTGTTTGGAATTTAAATCTTTTCCAGCTACCAAAGTAACTAAAGA
TGCGATCAAAGAAGTTGCTTGCAACTAGCAATGTGTAGATAACCATTATGAGGGGATAGATTTCATTGAACCGTTGTCCAAATACA
GGGACAGCGTCATCTATTCTACCCATTTTCTTCTCAAATATAGTCTCGGAATGAAGTTGAATGAGATTAATAAAGTTGTAAGATAT
TGGCGGCGCATATCGAGCAATCATCGAGCAAATCATTAGTAGATTAACAGAACTTGTCTGTCGAGGAGTCAAGGAGTATATCATGA
GCATTCCAATTTTGAAGAGTGAGTAATATGTACAGATGCACATATACACCAAAGGTACAAAAGCAAATGCCTGAGAGCAAAGTTGA
TCAGGGTTTAGGTAGAAAATAGAAGCAATTTGCTATACTATAAACCGATAATTAACACAAAAATGTAGAGTAACAACGTACCTGGA
CTAGCAGTTCATCTGATTTGACAAACCTAATAAGGATCGAGAAGAGGGATAAGTCCAGTTTACTAAGAAGGAGAGTTGCCTCAGCT
AAAAGAATTGCAGCTGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_201332 LMBR1-like membrane protein [Arabidopsis thaliana] | 984 | 3e-104 |
| XP_002864951 LMBR1 integral membrane family protein [Arabidopsis lyrata subsp. lyrata] | 984 | 3e-104 |
| CBI33147 unnamed protein product [Vitis vinifera] | 762 | 2e-078 |
| XP_002264408 PREDICTED: hypothetical protein [Vitis vinifera] | 761 | 2e-078 |
| NP_001032150 LMBR1-like membrane protein [Arabidopsis thaliana] | 740 | 7e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54TM2 LMBR1 domain-containing protein 2 homolog B | 209 | 1e-015 |
| Q54Q92 LMBR1 domain-containing protein 2 homolog A | 164 | 2e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FKQ8 Genomic DNA, chromosome 5, P1 clone:MNA5 | 984 | 2e-104 |
| Q2V2V2 Putative uncharacterized protein At5g65290.2 | 740 | 5e-076 |
| C5XYA9 Putative uncharacterized protein Sb04g027320 | 694 | 1e-070 |
| A2X9T7 Putative uncharacterized protein | 688 | 5e-070 |
| A3ABJ6 Putative uncharacterized protein | 688 | 5e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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