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Information for unigene UN00980
| FASTA Sequence |
| Unigene ID: UN00980 | Length: 1687 |
SSR | | GGACGCTTGCGCACCCAAAATTCATCGTCTCCGTCTTCTGTTTCGCCGTCACCGTCTTCTTCTTCCATTGCCAGGATCTTGTCTTT
AGATTCCTGCAAATGGCTTTTAGGCGAGCCTTATCTATAAGGTCCACCCTTACCGGTCGACAACGGTATCAACTAGCTTTCCACAT
CATCCCTCGTGACAATGATCATGAAGAGAGTTCTTCATTCACTTCTCAAAGAAGTTACCATAGCTTCCTTCACCAACAAAGATCCT
CCTCTATCATCAACTCAGACCTCTCCCATTTTCCTGGAGGAGGAGGAGGAGGCTTACATGTGACTTCTTCCGCCTCTGCTTTTGCT
TTCTATCGCTATATGTCAAGTGCGCATGGTGTTGGTTCCGAGAAAATGGGTGTGATCAACGACATCGCTGAAGTCATAACCGACTC
AGCTACGTTGCAAGATGTGCCAGCTCAGGCTGTTACTGCAGTCAGTGAAGTTGCACTTGCGGCTAATGACTCTTTCTTACCTATTG
CGGCTCTTCAGCATTGCATTGATATGGTTCATTGTTACACTGGTTTGGAGTGGTGGGCATCGATTGTATTAGCAACAGTTTTGATC
CGTTCTTCAACAGTTCCTCTCTTGATCAAACAAATGAAAGATACTATGAAGTTATCACTGATGAAGCCACGATTGGAAGCCATCCG
GGAGGAAATGCAAAACAAGGGAATGGACCAGGTTACAATGGCAGAAGGTCAAAAGAAGATGAAGAATTTGTTTAAAGAATATGGAG
TGACTCCATTCACCCCAATGAAAGGGATGCTTATTCAGGGACCTCTCTTCATCTGCTTTTCCTTGCTATACGAAACATGGCAGAGA
AGGTACCTTCGTTCCAAACCGGAGGTGCATTATGGTTTACCGATCTAACCACACCTGACAGCTTATACATCTTACCGGTTATAACA
GCATTGACATTCTTGATAACCGTTGAGTTAAATGCACAAGAAGGCATGGAAGGAAACCCAATGGCAGGCACTATAAAAAACGTTTT
CCGGGGTTTCGCTCTCCTCACAGTCCCAATGACAATGAGTTTCCCACAGGCCATATTTTGTTATTGGATCACTTCCAACCTCTTCT
CTCTCACGTATGGACTTGTCATCAAGCGTCCTCAAGTGAAGAAGATGTTAAAGATACCTGAACTGCCTCCACCACCTCCTGGTCAA
CAACCTTCCTTTGACCTGTTCGCAGCTCTCAAGAAAATGAAAGCCATGACACAGGACAATACCGAGAACCAGACTCAACAACCATC
TTCGCCAGTAAACCCGAGGATCTCTTCAGCGTCCATGAGTCCTGTTAGTAGGAGGCTCAAGGCTTTGGAGAGCCAAGTTAAGGGAA
GGAAGAAGAACAGCAGCAAGAAGAGGTGATTTAACTACCCTTGCGTGCATTAATATTTTGTTAGGGTGGCCGCCAAAGGAAAGAAA
CAATAAAAAGCTTTTATGTCAAAAAGTGTTAAGAGGATGAGAACCAATCATATTTGATACTACACGGTTTGTTCTCATTTTAGATG
AAACTAAAACCGGAGAGCCAGCTTTAGTGATATTATATGTTTTTCTTTGATAATTTTACCATAACCATATTTGTAAGTTTGTTCTT
TTTGAAACTTCTATTATATTTTTTCAGGTACTAGTAAAATCAAATGACATTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866467 hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata] | 887 | 7e-093 |
| NP_201011 mitochondrial inner membrane protein OXA1 [Arabidopsis thaliana] | 869 | 9e-091 |
| XP_002324680 inner membrane protein [Populus trichocarpa] | 572 | 2e-056 |
| CBI34480 unnamed protein product [Vitis vinifera] | 549 | 1e-053 |
| XP_002308102 inner membrane protein [Populus trichocarpa] | 538 | 2e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q42191 Mitochondrial inner membrane protein OXA1 | 871 | 2e-092 |
| Q9SKD3 Mitochondrial inner membrane protein OXA1-like | 461 | 8e-045 |
| Q15070 Mitochondrial inner membrane protein OXA1L | 264 | 5e-022 |
| Q8BGA9 Mitochondrial inner membrane protein OXA1L | 263 | 7e-022 |
| Q3SYV3 Mitochondrial inner membrane protein OXA1L | 246 | 6e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9IN48 Inner membrane protein (Fragment) | 572 | 2e-056 |
| B9HAX2 Inner membrane protein | 538 | 1e-052 |
| B9GL61 Inner membrane protein | 520 | 2e-050 |
| B9RCS4 Cytochrome oxidase biogenesis protein, putative | 501 | 3e-048 |
| B9SWW1 Cytochrome oxidase biogenesis protein, putative | 497 | 8e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G62050.1 OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter | 885 | 4e-095 |
| AT2G46470.1 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) | 461 | 7e-046 |
| AT3G49150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein insertion into membrane; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59240.1); Has 1228 Blast hits to 1197 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 135 | 4e-008 |
| AT1G65080.1 OXA1 family protein | 125 | 6e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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