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Information for unigene UN01017
| FASTA Sequence |
| Unigene ID: UN01017 | Length: 1264 |
SSR | | GAGGCAGTTAAAAGGAAAAACCATAAAAGCAGGCACCACTTGACTACAATGCACACATTACAACAGTGGAAGCTCTTTTTTTTAAC
CTTAAAAGGCTAAAAGCCTAAACACAATCTCAAAGACGGTAAACTTGACATTTCACCGTGGAATTTCACCATTATTTTATCGCTCT
CAGAACTATGCTCGAAGCTTTCTTATGCTTCCCACGACGTTCTTTCACATCTTAAGCTTCTCTATCTTCACATTCTCACTGTTTGA
CTTTGACACAGATCCTTCTTGAGCACTGCACATTTGATGCGACTTCAGCTTTATACCAAACCACGTTTTGCTACCGCTTCCCGAAC
CACCACCACCTTTTGTCGTCTTACCAAGCTTCTCAATCTCCTGTCTCATATTGGAACATTCTTTCTCCAACTCACAAACCCGCATT
CTCATACTGTCCATTCCAACTTTCAAGACTTGATTCTCTCTTACCGCAGTTGCCCATCCTCCTCCTCCTCCTCCTTCGGTCGATCC
TCCTGCAAATCCACCGCTTCTCAACTGTCTTGATCCACCATCTAGGTTGTCTGAAACCAGGAAACACCCAGCTACAGAGGTCCAGA
GCTGAAGCTGTCAAAGAAGAGGACTTGGACGATTATTCTTAGAGGTAACCCCTCGTTCTGCGCCGCGTGTGTGCAAGCTTCTAAAG
AGAGCTTCTGGCAATCTAACAACCTGCAAAGATTCTCTCTTTCGGTCTCCGCTAACCACGGATGATGCTTTAAGTAAATGTCTATT
GCGCGATAGAGTCCATCATCTAAGAGTCTAGCGTACTCAGGAACAGAAGCAGCTAAAGCTTGGAACTTAGGAAGCTTGAGATTAAC
ATCAGGAGCAACTTCAGCAAGATACCCATCGATCAGCTTTGCAACCGCTGTCATTGGCGTTATTAACTGTGGTGATCCCATTACAT
TCCCATCATCTACCGAAGAGCAAGGAGAGCCAACGTCAGCAGGCATGATCTGATCCGTACTAAGAAAATGGTCCAAGATCCTCTGC
ACAGAGTCAACGTCGTATAGAGTCTCCATCGTATGAGAAAAGCTAGGCATCACAAGATCCTCCAACGCCGCCTGGTCTAGCTGCAT
CCCTATCCTCTTCTCCAAATTGGCTACGCAGCTCGGACTGGCTTTCAAAATCTTGGCGATTCTAAGCATGTCGGCGAAAAACTTGG
TCGGGACCAAACCTTTTTGCATGCGGAGAAGCTCCTCGGTCTCTTCGAGCAAGTGCTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_174332 Phototropic-responsive NPH3-like protein [Arabidopsis thaliana] | 1044 | 3e-111 |
| AAF19742 Contains a bZIP transcription factor PF|00170 domain. ESTs gb|R30400, gb|AA650964, gb|AI994521 come from this gene [Arabidopsis thaliana] | 1044 | 3e-111 |
| XP_002890870 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 1031 | 1e-109 |
| BAJ34601 unnamed protein product [Thellungiella halophila] | 1031 | 1e-109 |
| XP_002298828 predicted protein [Populus trichocarpa] | 837 | 3e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9S9Q9 BTB/POZ domain-containing protein At1g30440 | 1044 | 1e-112 |
| Q9FKB6 BTB/POZ domain-containing protein At5g48800 | 465 | 2e-045 |
| Q9FMF5 Root phototropism protein 3 | 345 | 1e-031 |
| Q5KS50 Coleoptile phototropism protein 1 | 344 | 2e-031 |
| Q682S0 Root phototropism protein 2 | 248 | 3e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GJE4 Predicted protein (Fragment) | 837 | 2e-087 |
| B9SKU3 Root phototropism protein, putative | 832 | 8e-087 |
| A2Q365 BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 | 828 | 2e-086 |
| A5B9R9 Putative uncharacterized protein | 800 | 4e-083 |
| B8AN49 Putative uncharacterized protein | 768 | 2e-079 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G30440.1 phototropic-responsive NPH3 family protein | 1044 | 1e-113 |
| AT5G03250.1 phototropic-responsive NPH3 family protein | 618 | 3e-064 |
| AT3G44820.1 protein binding / signal transducer | 475 | 1e-047 |
| AT5G48800.1 phototropic-responsive NPH3 family protein | 465 | 2e-046 |
| AT1G03010.1 phototropic-responsive NPH3 family protein | 419 | 3e-041 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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