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Information for unigene UN01029

FASTA Sequence
Unigene ID: UN01029Length: 1331 SSR 
GGGGTGCCTTCAAACTCCACATCACTTTTAGCTGAGAAAAACATGTCCCCGCTTGTCCAATTATGAAACAAAAGGATTTTCTCTTG
TGTATGTTTTTTTTTTTTTTGCAAAAGAGAGATTAGGAGAGACCATGGAGCTACTAACCAAGTATCAAAGACCAAAAGACAATACG
TTGTTTTTCTGCTAGTTACTTCCTACTACTTAGCTAGCTAGCTTTTGACTTGAGACAGAGAACTATAATCTCCCAAAGCCGGGTGG
TGGATTGAAGCAAGGTCTAATCACCGGTCTAGGACCCTCAGGATCCACCCTTGGACGTTTAGAACCAGCTTGATGTGAAGTTTGAC
CTTGGAACTCAGTTGAACCACCAGCTTGATTTGGTGCCGCTTGATACGTTTCTGCCTCTATATCCGGTTGAGTCGGTGACGAACCA
AAGCTTGTTGGAAGGCTAGGGTCTAAGCCATCAGTGGCAATGCATGAGCTTTGAATGTCTGTTTCTGAAGCCTGCTGCATATGGGT
TGATTGAGCTGGAACAGATGATGATGAGACAATTTCTCGAGGAACCATGAACTTGAGGATAAGAGCCACAGGAATGTCAATTTCCA
GCTGGAAGTCTTCAATGAGTTCCATCATCTCCCTCAGTGTAGCAGCATCTCTGTTAGCTTCTTCGGCCTATAAGCCAACAACATAG
GTTACAACTTTTAACAAAATCAATGAGAATATACAGTTTGACAAAGAAGAGATGGATCGAAACAAGCTATATAACCTGTGATTCAT
GTCTTCTCTTTTCCTTGGCAGAGCGTCTGAGATTGATGATCTGTTCCTTCAAGAACTCCAGGGGAGAAAACTTGTTCTCCACGTTG
AAATAAAACATAAAACGGACTGCAGAAATATAGATGGCTTTGTCAAGTAGCTGTGTGACAAAATCTGCAGACATGAGATGAGTTTA
GTGTTAAACACACACACACACACAAAGGCAACAAATGTATTAAAATACAACTTACCTGGGATGGCATGACTTAGACCAAGAGATTG
GAAGAGTTTTGGCGCATGTTTGAAGTGAGCAACATGCGAGGCAAGTTGTAAAGTTTTATCTTTGTTAGGCAGTTTCACCACCAATC
CAAACGCCACGATGAACTGCAGAAAAGCCCAAACCTCGAGCGGTGACCTTTCAACACTAGCTCCCATCATCCTAACCCATCGAAGT
GCTACTCTTGTTGCATCATTCTGTAGACTAGGATCGGCAGAGCGTACAACACGTGCCAGCTCATCCAAAAGGGGAACCAAATTCAC
AAGTATAGGCTCTTTTAAACTCAACTCCCCTCTCAGACGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874393 predicted protein [Arabidopsis lyrata subsp. lyrata]3786e-034
NP_198074 Frigida-like protein [Arabidopsis thaliana]3185e-027
XP_002863495 hypothetical protein ARALYDRAFT_356488 [Arabidopsis lyrata subsp. lyrata]1975e-013
XP_002863498 hypothetical protein ARALYDRAFT_356493 [Arabidopsis lyrata subsp. lyrata]1975e-013
XP_002862604 hypothetical protein ARALYDRAFT_920493 [Arabidopsis lyrata subsp. lyrata]1913e-012

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O04650 A_TM021B04.7 protein3183e-027

Arabidopsis top hits (Blast detail)Scoree value
AT5G27220.1 protein transport protein-related3182e-029
AT5G27230.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).1156e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
95  100%

Unigene MembersMember information