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Information for unigene UN01043
| FASTA Sequence |
| Unigene ID: UN01043 | Length: 753 |
SSR | | AAACAGAGAAGCATTCATTATGAAGAGACCACAAAATAGAGAGAAACCCGAATCAAACCAAAGCTAAGTAGTCAATGGCAGCACAC
AGACAGACGAGAACATGTTTTTCAATCATAACCTTTACTTAATATGTTACTAATAAAAAGACCACTCGTGCATCCATTGCATAACA
AACATAGGTGAAGAGCTTCGTACGGTCCAAAACAGCCATCCTCTCACATAACTCTATATTCTTCGAAGCGCCCTCCAGAAGGGTGG
TGATCAAAACTGGCGCCTTGGAGGCCTAGCCTCAGCTTCAGAGACTCTTATTTGTCTACCGTCCAAATCGGCACCATTCAAGTTTC
TGATGGCATTTTGGACCTCTTGAGCAGAGTTGTACGTCACAAACCCAAAACCCTTAGATCGACCACTGTCCCTGTCGTAAATGACT
CTAGCCTCAGCTACTTTTCCCTGCTCCCCGAACAAACTCTCGAGAGCCATGTCATCGACTCCCCAAGATAGGTTGCCGACATAAAC
ACGGTTTCCTGAACCAGCACCACCACCACCACCACCACCATATCCAGAACCGGAGCTTCCCTCTTCGGTGGAGGAGGGAAATGGAT
TGGTGGTTGAGTTTGAAGGAGAGGGAAGGAGGGAGGAAGGGAGTGGAGGCGGGTCTGGAGATGGAGAAAGGAAGGGATTTAGGGTT
GAAGGTGGAGAGAGCGAGGGACGAAGCTGAAGCAGCCATGGAGGAAGAGATAGGGTTGAGAGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata] | 511 | 8e-050 |
| NP_181259 ribonucleoprotein [Arabidopsis thaliana] | 500 | 2e-048 |
| AAM66970 putative RNA-binding protein [Arabidopsis thaliana] | 500 | 2e-048 |
| XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 446 | 3e-042 |
| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 433 | 9e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 500 | 7e-050 |
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 433 | 4e-042 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 384 | 2e-036 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 383 | 3e-036 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 351 | 1e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7GA50 Putative RNA-binding protein | 500 | 1e-048 |
| Q8L941 Putative RNA-binding protein | 500 | 1e-048 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 376 | 3e-034 |
| Q8W214 Single-stranded DNA binding protein | 376 | 3e-034 |
| B6U471 Ribonucleoprotein A | 372 | 7e-034 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 501 | 5e-051 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 434 | 3e-043 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 434 | 3e-043 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 272 | 2e-024 |
| AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding | 224 | 7e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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