Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN01043

FASTA Sequence
Unigene ID: UN01043Length: 753 SSR 
AAACAGAGAAGCATTCATTATGAAGAGACCACAAAATAGAGAGAAACCCGAATCAAACCAAAGCTAAGTAGTCAATGGCAGCACAC
AGACAGACGAGAACATGTTTTTCAATCATAACCTTTACTTAATATGTTACTAATAAAAAGACCACTCGTGCATCCATTGCATAACA
AACATAGGTGAAGAGCTTCGTACGGTCCAAAACAGCCATCCTCTCACATAACTCTATATTCTTCGAAGCGCCCTCCAGAAGGGTGG
TGATCAAAACTGGCGCCTTGGAGGCCTAGCCTCAGCTTCAGAGACTCTTATTTGTCTACCGTCCAAATCGGCACCATTCAAGTTTC
TGATGGCATTTTGGACCTCTTGAGCAGAGTTGTACGTCACAAACCCAAAACCCTTAGATCGACCACTGTCCCTGTCGTAAATGACT
CTAGCCTCAGCTACTTTTCCCTGCTCCCCGAACAAACTCTCGAGAGCCATGTCATCGACTCCCCAAGATAGGTTGCCGACATAAAC
ACGGTTTCCTGAACCAGCACCACCACCACCACCACCACCATATCCAGAACCGGAGCTTCCCTCTTCGGTGGAGGAGGGAAATGGAT
TGGTGGTTGAGTTTGAAGGAGAGGGAAGGAGGGAGGAAGGGAGTGGAGGCGGGTCTGGAGATGGAGAAAGGAAGGGATTTAGGGTT
GAAGGTGGAGAGAGCGAGGGACGAAGCTGAAGCAGCCATGGAGGAAGAGATAGGGTTGAGAGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002881497 hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp. lyrata]5118e-050
NP_181259 ribonucleoprotein [Arabidopsis thaliana]5002e-048
AAM66970 putative RNA-binding protein [Arabidopsis thaliana]5002e-048
XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata]4463e-042
BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana]4339e-041

Swiss-Prot top hits (Blast detail)Scoree value
Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic5007e-050
Q43349 29 kDa ribonucleoprotein, chloroplastic4334e-042
P49313 30 kDa ribonucleoprotein, chloroplastic3842e-036
Q08935 29 kDa ribonucleoprotein A, chloroplastic3833e-036
P49314 31 kDa ribonucleoprotein, chloroplastic3511e-032

TrEMBL top hits (Blast detail)Scoree value
Q7GA50 Putative RNA-binding protein5001e-048
Q8L941 Putative RNA-binding protein5001e-048
B9S0K6 Ribonucleoprotein, chloroplast, putative3763e-034
Q8W214 Single-stranded DNA binding protein3763e-034
B6U471 Ribonucleoprotein A3727e-034

Arabidopsis top hits (Blast detail)Scoree value
AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative5015e-051
AT3G53460.1 CP29; RNA binding / poly(U) binding4343e-043
AT3G53460.2 CP29; RNA binding / poly(U) binding4343e-043
AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding2722e-024
AT2G21660.1 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding2247e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  50%
 
62  33%
 
91  17%

Unigene MembersMember information