Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN01078

FASTA Sequence
Unigene ID: UN01078Length: 912 SSR 
GAGACCAAGAAAAGAAACACAGGTTTCTTTTGTAAGTTCCTCTGATATCCAAGATGAAGATACAGTGTGATGTATGTGAGAAAGCT
CCTGCTACACTGATATGTTGTGCAGATGAGGCTGCTTTGTGCGCTAGTTGCGACGTTGAGGTCCACGCTGCCAATAAGCTCGCTAG
CAAACACCAGCGCCTTTTTCTTGACTCTCTCTCCACCAGGTTCCCTCCTTGTGACATCTGCCTTGAGAAGGCAGCTTTCATATTCT
GTGTTGAGGATAGAGCTCTGCTCTGCAGAGACTGCGATGAGGCCACCCATGCGCCTAACACTCGCTCTGCTAATCACCAGAGGTTC
TTAGCTACTGGAATCCGAGTCGCTCTGAGTTCCAAAAGTTGCAGCAAAGAAGTGGAGATGAATCATTTCGACCCACCTAACCAGCA
GAATGCAAAGCAGATTCTCTCTAAACCACCAGCTCAACCGTCTGTTCCGTCTCCTCCATGGGATGGCGATGAGTTCTTCCGCTACT
CTGATCTTGAGTGCAGTAGTAACAAGAAAGAGCAGCTCGATCTTGGTGAACTGGACTGGCTTGCAGAGATGGGTTTCATTGGGGAC
CAGCCTGATGATCAAGAAGCTCTACCGGCAGCTGAAGTTCCCGAGATTTCTGTTTCACATCTGGCTCATGTTCATTCCTACAATAG
ACCCGTGAAGTCCACCAATGTTTCCAACAAGAAGCCGAGGCTTGAGATTCGGTATGATGATGATGATGATGAGCACTCCCTTGTCC
CTGACCTTGGCTAAGCTATGGATTAAACTATATATATAGCATTTGGTTCGTATATGTATGTACCTACCTACACACACACATCTCTT
GCTCTTGCGCTTGCATTGCTTAAACTTGGAATAAAAAGCTCTTATTATTAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34047 unnamed protein product [Thellungiella halophila]10952e-117
XP_002879325 hypothetical protein ARALYDRAFT_482070 [Arabidopsis lyrata subsp. lyrata]10478e-112
NP_565722 Salt tolerance-like protein [Arabidopsis thaliana]10281e-109
NP_172094 Salt tolerance protein [Arabidopsis thaliana]8892e-093
ABV89657 salt tolerance protein [Brassica rapa]8641e-090

Swiss-Prot top hits (Blast detail)Scoree value
Q9SID1 Salt tolerance-like protein10563e-114
Q96288 Salt tolerance protein8898e-095
Q9SYM2 Probable salt tolerance-like protein At1g786003727e-035
Q9LQZ7 Probable salt tolerance-like protein At1g755403413e-031
Q9FHH8 Zinc finger protein CONSTANS-LIKE 51584e-010

TrEMBL top hits (Blast detail)Scoree value
A8IXV4 Salt tolerance protein8649e-091
B9MY52 Predicted protein7375e-076
B9T7C0 Salt-tolerance protein, putative7269e-075
A9PEW0 Putative uncharacterized protein7196e-074
B3TLK3 Putative transcription factor7081e-072

Arabidopsis top hits (Blast detail)Scoree value
AT2G31380.1 STH; protein domain specific binding / transcription factor/ zinc ion binding10563e-115
AT1G06040.1 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding8905e-096
AT1G06040.2 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding6056e-063
AT1G78600.1 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding3726e-036
AT1G75540.1 STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding3412e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
101  33%

Unigene MembersMember information