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Information for unigene UN01161
| FASTA Sequence |
| Unigene ID: UN01161 | Length: 1349 |
SSR | | GGAGACACGCTCATTTTGTGCGTGCGTAGGGCTTTTGACTCTCTCTCTCTCTCTCTCTCACTATAGCTCCTTACTTGTGGCCACTC
AACATATAGTCCACACTTTCCTCTCACGGAGAGAAGACATAGTTTCTTCAATCGGCGCCAGATCCTCCGAGAGTGGCAGATATGAT
GGAATCGGGGGCTGGTCTCTTGGCGATGGAAGAGAGGATCCTACCGGGAAGCTTCTTCCAGTTTCCTCTTCCTGGATTCAGTGCTT
CTCCCAATCGGTTATCTCCTTGTCCTCCTCCCCCTCCTCCCACTGGTCGTGAGAGGTACTTGGCTGAATTGCTGCAAGAGAGGCAA
AAGTTGGGTCCTTTCTCACAACTTATGCCACATTGCTGCAGACTACTTAATCAAGAAATTCGGAGGGTCTCAAGTTTATCCGACCT
TGATAGATATGAGCCTGGCAGTCCATTTAGATCGCCTGCTCTTCTGCCCCCGACTAATGGAAAGCTTGATTTTGATGGATGGTCAA
TGATGCAAGCAGAGGAGAATTTTCATCACCAGAGAGCTTCCCCATTTCGTGCTCCAGTAGGCTGGGGACTCCATTCTCCTCCACCC
ATTGTGAAAAGAGTGATTAGGCTTGATGTGCCTGTCGATCAATTTCCAACCTTCAATTTCGTTGGGCGGATTCTCGGCCCGCGTGG
GAACTCTCTAAAAAGAGTCGAGCTGGCAACACAGTGTAGGGTGTTTATTAGAGGACGAGGATCCGTCAAGGATACTCTCAAGGAGG
AGAAACTCAAAGGTAAGCCAGGTTACGAGCATCTCAGTGAGCCACTACATTTACTGATCGAAGCCGAGCTTCCCGAGGACATAATC
AACTCTCGATTGGAGCATGCAGTTCATTTCCTTGAGTCGCTCCTAAAGCCAATGGACGAATCAGTGGACCACTACAAGAGGGAACA
GCTGAAGGAGTTAGCTGCTCTGAATGGTACGCTAAGGGAAGAGAGTCCAAGTCCGAGCTTGAGCCCTTGTCTGAGTCCGAGCATGT
CCCCTTTCAACACCAAGCGTGCCAAGACTGGACAATAAAGATTTTTACACGAGAGATGATTTCCTTTTTTTCTGTGATTCGGACAG
AGAAACCATGGCATGGTCGTGTGGACTTGGGGCAAATGCTCTCTCTCTCTCTCCCTATACATCATTGCCTATCTATCTGCGGGGTG
ATAACGTTCTAACGTTTTTGATGAGACACTTCAATTAATTTGTTTTGGTCATTTAAGTTTATTCTTTACTAGTGGTTTTCCGGCGC
TACGCGCCGGGTTCGTATATTTTATTCTTAAATAAATTTACAGTTTATTTTATGATCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892515 hypothetical protein ARALYDRAFT_471067 [Arabidopsis lyrata subsp. lyrata] | 1272 | 1e-137 |
| NP_172437 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 1255 | 1e-135 |
| AAL31922 At1g09660/F21M12_5 [Arabidopsis thaliana] | 1251 | 3e-135 |
| NP_973800 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 1011 | 2e-107 |
| XP_002328717 predicted protein [Populus trichocarpa] | 916 | 2e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GWR3 KH domain-containing protein At1g09660 | 1255 | 5e-137 |
| Q0WLR1 KH domain-containing protein At4g26475 | 620 | 2e-063 |
| Q9FKT4 KH domain-containing protein At5g56140 | 620 | 2e-063 |
| Q8GYR4 KH domain-containing protein At3g08620 | 618 | 4e-063 |
| Q9ZVI3 KH domain-containing protein At2g38610 | 588 | 1e-059 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9N0F3 Predicted protein | 916 | 2e-096 |
| B9SKB5 Nucleic acid binding protein, putative | 892 | 1e-093 |
| A9PGS1 Predicted protein | 884 | 8e-093 |
| B8AYB7 Putative uncharacterized protein | 813 | 1e-084 |
| Q60DW1 Os05g0419500 protein | 813 | 1e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G09660.1 KH domain-containing quaking protein, putative | 1265 | 3e-139 |
| AT1G09660.2 KH domain-containing quaking protein, putative | 1021 | 6e-111 |
| AT3G08620.1 KH domain-containing protein | 628 | 2e-065 |
| AT4G26480.1 KH domain-containing protein | 625 | 5e-065 |
| AT5G56140.1 KH domain-containing protein | 620 | 2e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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