RadishBase

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Information for unigene UN01239

FASTA Sequence

Unigene ID: UN01239	Length: 1158	SSR
AGTCGAGTAATTTGGTAATAATGGTGGTGGCCGTGGGTGTGCTCCACCTCCTCTCATCGTCTTCTTCGCGAATCGTTTGTTTATCT ACTTCTTCTCGCCCTCCCCTATCAGCTGCTGTTGCTAAAGTGGTACTTAAAAAGGGAAAGACGCAGCTGTTCAAAGACGTAAGTCC AATGGTGTACAGTGGAGCGGTGGACAGGATCATCGGAAAGCCACCTCCAAAGACCGGAGACGTCGTCATTGTCGCCGACGGCACCG AGAATCCCATCGGCTGGGGTTTGTATAACTCCGTTTCTATGTTCTGTGTTCGCCTTATGCAGCTCCAACACGAATCCACCATAGAT CCTTCTTGTGCACTCAACGTTGAGAAGCTTCTCCAGACTAGAATCACTCAAGCTGTTCAGTTAAGGAATCATTTGGGACTCCCCTC GGAAAATAACCACACTAATGCTTATCGTCTTGTCAACAGTGAGGGAGATAGATTGTCTGGATTGATAGTGGATGTGTTTGGAGATA TAGCTGTGGTTGCATCCTCAGCTGCTTGGATTGAAAAGTACAGGAATCATGTGGAGGCTTGCTTGAGATCATCAGTCCATGGAATT AATCACATCAACTGGAGACCTTCTCTTGATCTTCTCAAAGAAGATGGCTTTGATATCTCCTCTTTTAAACTAACACAATCATCATC ATCATCATCTCCTCCTCTCCCGAGAGATCAATGGTCTTTGCTTTCCCCTGGCTATCTTTATGGAAACAAACAAACAATCATCAGGG AATGATGTTCTTTCTTATGCCCTAGGTGGTGGAAAATGGAATCACTTACGCAATCTCGCTAGAGGGACAGAAGACAGGGTTCTACA CCGATCAACGCGAAAACCGTCACTTCATATCAACCATCTCCGCTGGCAAAAGAGTTCTTGATCTCTGCTGCTATAGTGGTGGTTTC GCACTTAATGCTGCCAGAGGAGGTGCTACCAGTGTCCTCGGGATTGATTCATCTTTACCTGCTTTGGAGCTGGCCAGAGAGAATGT AATCCTCAACCATATGGATCCAGGGAAGGTTGTTTTCTTCAAACAAGATTCTACAGAATTCATGAAGGGTGCTCTGTCAAGGGAAG AGACTTGGGACATTGTCATCCTTGACCCTCCTAAGCTAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAD25611 Hypothetical protein [Arabidopsis thaliana]	853	4e-089
NP_564655 S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]	853	4e-089
NP_974023 S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]	853	4e-089
XP_002891882 RNA binding protein [Arabidopsis lyrata subsp. lyrata]	841	9e-088
XP_002451632 hypothetical protein SORBIDRAFT_04g004900 [Sorghum bicolor]	711	1e-072

Swiss-Prot top hits (Blast detail)	Score	e value
C4L7I7 Ribosomal RNA large subunit methyltransferase I	251	1e-020
A8GCM8 Ribosomal RNA large subunit methyltransferase I	250	1e-020
A4SML8 Ribosomal RNA large subunit methyltransferase I	248	2e-020
Q12JE5 Ribosomal RNA large subunit methyltransferase I	242	1e-019
A0KKF0 Ribosomal RNA large subunit methyltransferase I	241	1e-019

TrEMBL top hits (Blast detail)	Score	e value
Q9ASW2 At1g54310/F20D21_13	853	3e-089
Q9SLK3 Putative uncharacterized protein F20D21.13	853	3e-089
C5XW61 Putative uncharacterized protein Sb04g004900	711	8e-073
A2X1G1 Putative uncharacterized protein	691	2e-070
B9RRQ3 RNA binding protein, putative	683	1e-069

Arabidopsis top hits (Blast detail)	Score	e value
AT1G54310.1 RNA binding	853	1e-091
AT1G54310.2 RNA binding	853	1e-091

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			33%


9	1			33%


10	1			33%

Unigene Members	Member information