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Information for unigene UN01255
| FASTA Sequence |
| Unigene ID: UN01255 | Length: 763 |
SSR | | ATCATGAGGACTAGGACGGTGAAGCGAGAATCGGAAGCCACCGGAGAAGCCAGTGGCAGCAGAGACGCCGGCGAGTCGGAGAGGTT
TAGGTCTGTGAAAAGGGAGAAGAACAAAGGCGTAGCTACAACCTCCGTGCGAAACGACGAGCAGCCGACTCAGGGAGAAGAAGAAG
AAGAACATGAACAGGGAGTATCTGATCGGAGGGTTCTCAGATCTCAGTATCTCGCTCTAATCAACAAAATCAGCGATTCTAAAGAT
GATATGACGAGTGTTGATTCTGACAAATTCTCTAGAATTTTCAGTGAATTTGAGAACCTCCACCAGAAAGTTCAGAAGCCTAGGGA
GCAAATTGCAGATGCAGAGGCGTTTCTGGATATAGCAAACACCATGTTGTCATCCGTCAAGTCTCAGTCTGCTAACGGCGTTTCTC
CCGCTGAGTTTGTGAATGCTTTGGTGAATGGGTTTGGTCAGGCTCCTCTAGGGATCGATGATGCTGATGAAACTGCGGCCTCTGTA
TCTATCAAATGGAATGATCTTGGGCTTGCTGTCTGTTCTACTGTTTTGGTCTCGTGTGGCTGTTCCACTATGTTGGGACCTATGGA
CACTGAACTGAAGGAGAGGAAAAGGGCAGTCTACAGAAAACGTACAAAGCCTGGTGAAGCGTTCGTCCCGATGAGTAGACGATACG
CAATCAGAAGAGAAACTGATACAGACAGATATGGCGATATGTTAACATCTTACGCAAAGAGCGCGTGGGGCTTGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894295 hypothetical protein ARALYDRAFT_474228 [Arabidopsis lyrata subsp. lyrata] | 743 | 1e-076 |
| NP_175525 Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana] | 715 | 2e-073 |
| XP_002885402 hypothetical protein ARALYDRAFT_342232 [Arabidopsis lyrata subsp. lyrata] | 661 | 3e-067 |
| BAB02484 unnamed protein product [Arabidopsis thaliana] | 620 | 2e-062 |
| NP_188712 Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana] | 620 | 2e-062 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C689 Putative uncharacterized protein At1g51130 | 715 | 1e-073 |
| Q9LT44 Genomic DNA, chromosome 3, P1 clone: MOE17 | 620 | 1e-062 |
| B9GYV4 Predicted protein | 443 | 4e-042 |
| B9F3U1 Putative uncharacterized protein | 410 | 3e-038 |
| B8AJA9 Putative uncharacterized protein | 406 | 9e-038 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G51130.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | 731 | 1e-077 |
| AT3G20760.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cotyledon; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51130.1); Has 190 Blast hits to 190 proteins in 77 species: Archae - 0; Bacteria - 4; Metazoa - 67; Fungi - 72; Plants - 37; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | 620 | 8e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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