RadishBase

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Information for unigene UN01321

FASTA Sequence

Unigene ID: UN01321	Length: 1852	SSR
GCAACTTTCGATGGTAGGATAGTGGCCTACCATGGTGGTTTACTCGGTACCGGAGAATGGTTTCAAGATATCTGCATGTGGAAGAG ACCAGTAACTTCTACAGCGGTTCATGTACTCTACTTAGCGTTTGTGTGTTTACCAGAGATGATTCTTCCGTTAATTTCTCTTTGGT TGTTCATGCTTGGTGTATGGAACTACAGATTACGCCCAAGACAACCTCAACACATGGACACAAGCCTTTCATTTGCAGACAATGTT CACCCTGAAGAGCTTACGGAGGAGTTCGATACGTTTCCATTCTCTTCCCAAGACCCAGGGACTGTTAAATTGCGGTACGAGCGGTT GAGGAGCATAGCTAGTAGAGCTCAGACGCTTGTGGGAGATATAGCTGGTCAAGGAGAGAGAGTTCAAGCTCTGTTAAGCTGGAGAG ATCCAAGAGCAACGTCCATCTTCATGGTGGTATGTTTGGTTTCTTCTGTGGTTTTATATGTTGTGCCGTTTAAGGTTTTTGTTCTC CTGACCGGATTGTATATCATGAGACATCCAAGATTCAGGAGAAAGACACCTAATGGTCTGGTTAACTTCTTTAAAAGACTTCCCGC TAAAACAGATTGTATGTTGTAGAATAATAAATGAAAACACATGAGTTCTGAAAAATCACTACAAGTCTTTTTGTTTCCTAGACATA AAACCAAAAGACAATAATACTCTCAGAGAGGTGTTAGCTTTAAAGTCTTTGTCTTCTTCTTCTTCTCCTAGGTTTCAATGGTTATG TACTACGCACATGAATCATCATCCGCGCATTAGATCAATGTCCATATGAGCGTGATGCATATCCATCGATCTTGAACCGGTTGACC ACATGCCTACAGGAGTCTGAACAAGGTTCTGAGGAACAGAAGGCGACGTTGGTGCTGCGGCTGCTGTGTTGTCGTTGTTCTCCAAA GCATCGGTCTCTTGAACATCTTCAGAAGCTTCTTCTCGTCTCTTAACCTTCAGTTTGGGAACCGCCCAAAGGAAGCTCCCAACGAT AACCTGAACATGACTTGCTGCAATTAAAGGCCCTCCAATTCCACCACCAATGACACGACCATCAGGGCTAGCGAGTGAGACCGCTA GGTTTCCAGTGCGGTTTGAGTAGTCATTGTCATTTGCGTTCAGATAAGAAGGTGATAGAGAAACAAGCTCGAAACGACCCTCGTAG GTTATAGCTCCATGGGATGGTGCTGGTTGAATAAGCGTTGCAGTAGAAACTGCACCAATAGCTGATAAGACACAAATGGCTCTTGG ACCTTGCTGAGAGAAAGACAGTACCTTTGATGCAATGTCTTCACCAACGGAGACTACGATTACGTGCGGCGTGAAGCTCATCCCTG ACGATGAAGGCATCAAGTCACCAATGGAAGCAAGTCTTTGCTTCTTGCAGGAGCCAGGAGGTCTACCACGACCACGTTTGTTAGAG TTTGGGGGGGACATGGAAGGAGACAATGCTAAAGAAACAGAACCGTCTTGTCCGTATTTCCTAGGCCGTCCTCTCTTCCTCTTCCC AGAGGTCTCACCGGAAGTAGGAGGAGGAGGAGGAGACACGAACCCAGTGGAGCCGCCGCCGCCGCCGCCGCTTCCTGGGTTGTTCT GGTTAGACAAGAAAGGAGAGTTGGGATTGGAGAAATGGTGAAACCCTTGAAAGGGATGTTGAGTCTGAGGAGGAGGAGGAGCAGAA CCAGGCATGCCTCTTTGGATGTAATAAGAACCCATTGCTTCTCTTCGATCCATAGCCTTTCTTCTAAAAAGGTTCGAACTTTGTGG CTAAGGGAATACAAAAGAAGAAGGAAAGATCTGATTTTTTTTTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002878374 hypothetical protein ARALYDRAFT_324562 [Arabidopsis lyrata subsp. lyrata]	1109	1e-118
CAB71061 putative DNA-binding protein [Arabidopsis thaliana]	1093	1e-116
NP_191690 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	1093	1e-116
NP_182109 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	942	3e-099
XP_002876605 C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]	924	4e-097

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S7C9 Putative DNA-binding protein ESCAROLA	206	3e-015

TrEMBL top hits (Blast detail)	Score	e value
Q8L7L5 AT-hook motif nuclear localized protein 11	1093	7e-117
Q9M2D3 Putative DNA-binding protein	1093	7e-117
O80834 AT-hook motif nuclear localized protein 9	942	2e-099
Q9M2D4 Anthranilate phosphoribosyltransferase-like protein	899	2e-094
C6T9A7 Putative uncharacterized protein	752	2e-077

Arabidopsis top hits (Blast detail)	Score	e value
AT3G61310.1 DNA-binding family protein	1094	3e-119
AT2G45850.1 DNA-binding family protein	947	3e-102
AT2G45850.2 DNA-binding family protein	947	3e-102
AT3G61300.1 C2 domain-containing protein	900	9e-097
AT3G57880.1 C2 domain-containing protein	669	6e-070

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			11%


11	6			67%


10	2			22%

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