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Information for unigene UN01367

FASTA Sequence
Unigene ID: UN01367Length: 1382 SSR 
GGAGATCTGAACTCTCTCCAGAAATTCTCTAATCTGTATGTGTATTGAATTCAACTCAGCTCTCAATTCCAATACATCTCTCTCTC
TCTCTCTCTCTCTCTCATGGCGCAGCAACAGTTCCTTCACCAGCGCCCAATCAAAAACCCTTTCTCTTCATCCCCTCTTTCAAACT
CTTCACTCTCTAACCGCCCAATCTCCCTCCTCAGCCGCAACGGTCTCCTCCTCCTCCTCGCACTCCTCGTCATCCTCGGCGTGTTC
CTACCCTGGGCTGGATCTCCCTTACTCCCATTCCCAAACACATTCTCTTCCTCTTCCCACTCCAAATGGCGCGACTACTCCCTCGC
TCAAGCCGTTAGATTCGTCGCTAAGAACGGCACAGTGATCGTCTGCGCCGTGAGCTATCCATACTTGCCTTTCCTCAACAACTGGT
TGATCAGCGTCTCCAGGCAGAATCATCAAGACAAAGTCCTCGTCATCGCCGAGGATTACGCTACTCTCTACAAGGTTAACGAGAAG
TGGCCTGGTCACGCCGTTCTCATCCCTCCCGCCCTCGATTCCCAGACCGCTCACAAATTCGGTTCCCAGGGTTTCTTCAATTTCAC
ATCAAGGAGGCCGCAGCATCTGTTGCAAATTGTGGAGCTAGGTTACAGTGTTATGTACAACGATGTTGATATGGTCTGGCTCCAAG
ATCCCTTCAACTATTTGGAAGGAAGACATGATGTGTACTTCGAGGATGACATGACTGCTATTAAGCCCTTGGATCATTCTCATGAT
TTACCACCTCCTGGTAAAAAAGGAAGGCCTTATATTTGTAGCTGCATGATTTTCTTGCGTCCCACTACTGGCGCTAAGCTTCTGTT
GAAGAAGTGGATTGAGGAAATGCGAGACCAACCTTGGTCCAGAGAAAAGAAAGCTAACGATCAGCCTGCTTTTAACTGGGCTCTTA
TGAAAACAGCCCATCAGGTGGATCTCTACTTGCTTCCTCAGGCAGCATTCCCAACAGGAGGATTATACTTCAAGAACAAGACATGG
GTTAAGGAGACAAAGGGGAAGCATGTGATAATCCATAATAACTACATTCTTGGTTTTGAAAAGAAGACGAAACGTTTCCGTGACTA
TGGTCTATGGTTAGTGGATGATCATGCTCTTGAGTCTCCATTAGGAAAATTAGAGTAAATTCACATGGCACAAAAAGGAAAAAGAT
TGTTTTGTTTTGGTCGCACCACCATCTTTTAATGTTTCAGGCTGTGGAAAGAAAGATAAGATTAACTTTTTGTAGGAGTCTTTTAA
AGTTGTGAGAGTGCTATATCCATTCAAGTAATGTTATGTCAAAATGCTATAACTGACATTGAGTCGGGAAATTCTATTCGATTACT
TCGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872902 hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata]17236e-190
NP_849279 rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]16923e-186
XP_002511939 conserved hypothetical protein [Ricinus communis]14826e-162
XP_002874960 hypothetical protein ARALYDRAFT_490401 [Arabidopsis lyrata subsp. lyrata]14664e-160
NP_192086 rhamnogalacturonan xylosyltransferase 1 [Arabidopsis thaliana]14621e-159

Swiss-Prot top hits (Blast detail)Scoree value
Q75JC9 Uncharacterized protein DDB_G02716701282e-006

TrEMBL top hits (Blast detail)Scoree value
Q9M146 At4g0122016922e-186
B9RE00 Putative uncharacterized protein14824e-162
Q9ZSJ2 1,3-alpha-D-xylosyltransferase14628e-160
A0PGM9 Putative xylosyltransferase14592e-159
Q9ZSJ0 1,3-alpha-D-xylosyltransferase14564e-159

Arabidopsis top hits (Blast detail)Scoree value
AT4G01220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).16937e-189
AT4G01770.1 RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase14633e-162
AT4G01750.1 RGXT2 (rhamnogalacturonan xylosyltransferase 2); UDP-xylosyltransferase14572e-161
AT1G56550.1 UDP-xylosyltransferase13702e-151
AT4G01220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 153 Blast hits to 150 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).13622e-150

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information