RadishBase

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Information for unigene UN01416

FASTA Sequence

Unigene ID: UN01416	Length: 1433	SSR
GGCTTCTTCGTTTCGTCTATCACGCGGCACATAAGGGGCTGAGAGATAGAGAAAGACTCCTGCTGCTGTTTGAAGCTGACTAGATT TAACCATGCCGCTCTTGGATATTCAACCACGAACACTCAAGTTTCCAGTTGATCTGAAGAAGCAGACTACCTGCATGGTACAGCTT ACCAATACAACTGATCGTTATGTCGCGTTCAAGGTCAAAACTACATCACCAAAGAAGTACTGTGTGCGTTCAAATGTTGGCGTTGT TGCACCAAATTCATCCTGTGAATTCTCTGTCATTATGCAAGCTTTCAAAGAACCACCTCCAGATCTGGCTTGCAAAGATAAATTCT TAATCCAGAGTACTGCTGTGCCTGCGGACACAACTGATGAAGACATCACAGCTAGCATGTTCTCCAAAGCGGAAGGCAAACACATT GAGGAAAACAAACTGAGAGTCACTCTCGTGATGCCCTCCGACTCACCTGAACTATCTCCAGTTAAGGGGACACTGAAGCAGGAAGC AGTATTTGAAGATTCCATCCTCAAGGATGGGTTATATGGTCAATCAGAGACACTTCCTCCTCCACAATATGAGAGTGAGATTGTAA AGGAGCCTAGGATGGTTGGGCATGATGAGCTAAAGGCATCCTATGGTGCAAAGGAGTTGGTGCAACCAAAGGATTTTATTGAAGAT GTGAATCCTGCTAATTACTTAAAGCCAACACATACTTTGGATACTCCCACGAATATGGCCATGGAGAATCAAGGGTTTACTAATGG AATGACTTCAGCTAACGGTGTGACTTATCCTGATGAACCAAAGATGCTTGAGAAAAGAGATGGTCAGAAGATCAAAGCATCGGATG AACTTAAGTTGGTTAAAGACATTGAGGAGATGAAGCTGAAGGTCAATGCTCTTGAATCGAAGCTAAAACAGGCTGATTCAACCATT TCGAAGCTAATGGAGGAGCGGTCCATAGGATCCCAACATAGAGAAAGCTTGCAACAAGAGCTGGCGGAAATGAGGACGAAGAAGAT AGTGAAAGAAAAGCACATTGGGTTTCCTCTGCTGTTTGTATGCGTGGTGGCGTTCATCAACATTGTTCTCGGGTATAGTCTGCGCA CTTGACTGCTCGGTCTCTCTTCTCTTTAGGCCACACATATCTCTAATATCTCATAGCAAGTGTGCAGTCAGAAAATAAGGATTCTT CTCGTTTTGATTTGTTTTGATTTGTTTTGTTTTGTGGGAGAGAGCATGATGATGATTTTCTCCAGACACTTTAAAGATGGATTAAT ATAGACTCTTGTATAGCGTTGGGTTGTTAGCTGACACAAATGGACATGTGGTAATGATGATGATGATGATGATATGCTTTTGTTTC TTGGCTCTTTCACTTACTAATTTGAAGGAGCCTACTAATTCCAAGTTATTAAACGCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172359 vamp/synaptobrevin-associated protein 27-2 [Arabidopsis thaliana]	863	4e-090
AAF99771 F22O13.31 [Arabidopsis thaliana]	863	4e-090
XP_002892474 VAMP/synaptobrevin-associated protein 27-2 [Arabidopsis lyrata subsp. lyrata]	849	1e-088
XP_002266266 PREDICTED: hypothetical protein [Vitis vinifera]	520	2e-050
ACU21258 unknown [Glycine max]	502	3e-048

Swiss-Prot top hits (Blast detail)	Score	e value
Q9P0L0 Vesicle-associated membrane protein-associated protein A	207	2e-015
Q5R601 Vesicle-associated membrane protein-associated protein A	207	2e-015
Q10484 Uncharacterized protein C17C9.12	205	3e-015
P40075 Vesicle-associated membrane protein-associated protein SCS2	204	4e-015
A5GFS8 Vesicle-associated membrane protein-associated protein B	204	4e-015

TrEMBL top hits (Blast detail)	Score	e value
B9DHD7 AT1G08820 protein	863	2e-090
Q9FRQ7 F22O13.31	863	2e-090
C6THF6 Putative uncharacterized protein	502	2e-048
C6T767 Putative uncharacterized protein	501	2e-048
B9REW5 Vesicle-associated membrane protein, putative	498	5e-048

Arabidopsis top hits (Blast detail)	Score	e value
AT1G08820.1 VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule	863	1e-092
AT1G08820.2 VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule	863	1e-092
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	367	4e-035
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	367	4e-035
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	367	4e-035

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			33%


6	2			67%

Unigene Members	Member information