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Information for unigene UN01417

FASTA Sequence
Unigene ID: UN01417Length: 1027 SSR 
GTGAGAGCGAATTAACATCATCCAATTCCCTGAAACTCCTCTCCCTCGGGGCGATCGATTCGATTTAGCGATTTTTGCCTCCCCAT
GGAAGGAAACTTCTTCAGCTCTGATGATGCTCAACGCGATGATGATGGCTCCACGGTCAAACAAAAACCTAATCCAACAGAATCTC
AATCCAACGAAAGCAGCGGATGTTTTGATTGCAACATCTGTCTAGACACAGCCCTTGATCCCGTGGTCACTCTCTGCGGACACCTT
TTCTGCTGGCCTTGCATCTACAAGTGGCTCCATGTTCAGCTCTCTTCTTCTTCTCTCTCCATCGATCACCACCACCACCACCACCA
GAACAACAACAACAACAACAACAACAACAACAACTGCCCTGTCTGCAAATCCAACATTGCCATCACCTCACTGGTTCCTCTCTACG
GAAGAGGCATCTCTTCTCCATCCTTTGACTCCAAGGAACAAGAAAACTCAATACCTCGTAGACCTTCTCCATCAAACAATCCCACC
TCTCCAGATTTACCTCTGCGACAACACCGAACAATGTCTCCAACGTTTCACAACCACCACCGATACTCCTCCCGTGGCTTCACCAC
CACAACTGAGTCAACAGACCTTGCCAACGCGGTGATGATGAGCTTGCTGTACCCGGTGATCGGGATGTTTGGGGACATGGTCTACA
CCAGGATATTCGGAACTTTCACGAACGCGATAGCTCAGCCTTATCAACAAAACCAGAGGATGATGCAGACTGAGAAGTCTCTTAAT
CGGGTATCCATTTTCTTCTTCTTTTGCATCTTCCTCTGCCTCCTTCTCTTCTAGTTCTCTCTCTCTCTCTCTCTCCCTCTTGTATA
CACTTTTGTTGTAAATAGACTGTAAAAAACTCAAAAGTCGCTGTGGTATAACAACAACATATACACTATTGTTCTGAGTTAGGTCT
ACCTGTGTACCTGTGTATTGAACCATATACATGTTTGATTGAGTCTCATACGAACATTTTCATCATCTCTGTTTATTCTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869561 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]8542e-089
NP_194477 E3 ubiquitin-protein ligase RMA3 [Arabidopsis thaliana]8382e-087
CAB43879 putative RING zinc finger protein [Arabidopsis thaliana]7791e-080
XP_002864274 hypothetical protein ARALYDRAFT_918469 [Arabidopsis lyrata subsp. lyrata]6742e-068
XP_002282248 PREDICTED: hypothetical protein [Vitis vinifera]2323e-017

Swiss-Prot top hits (Blast detail)Scoree value
Q8GUK7 E3 ubiquitin-protein ligase RMA38442e-089
O64425 E3 ubiquitin-protein ligase RMA11926e-014
P93030 E3 ubiquitin-protein ligase RMA21872e-013
Q6R567 E3 ubiquitin-protein ligase RMA1H11854e-013
Q09463 RING finger protein 51712e-011

TrEMBL top hits (Blast detail)Scoree value
C6TBF7 Putative uncharacterized protein2261e-016
Q8H222 Putative RING protein2242e-016
A9PCH2 Predicted protein2214e-016
B9H2V8 Predicted protein2205e-016
B9SNN5 Rnf5, putative2197e-016

Arabidopsis top hits (Blast detail)Scoree value
AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein8451e-090
AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein1952e-015
AT4G03510.1 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding1925e-015
AT4G03510.2 RMA1; protein binding / ubiquitin-protein ligase/ zinc ion binding1925e-015
AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein1872e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information