RadishBase

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Information for unigene UN01556

FASTA Sequence

Unigene ID: UN01556	Length: 940	SSR
TAAGCGAAAAAAAAAAAATGCATGAATCAAAGCGTATAGTTTAATTAAACTGCTACATCATCATCAGACAAACCAGGAATGTTCAA AGCAGGATGTTAACTAAAAACACAACGTTTGCTTTTTTTCGGCACAAGAGATCGAAACACCCATCTTCTTCTGATGAAACTACTTC AGTAAGCTACCTGCAACCATGCTAGGTTTTGTCAAAGTTTTACTGATGAGATCTCTCAGCTCGATCTCTCCCGGGAATCTACCCTC TTTCAACTTAGAGAACACCAGTTCCCCGTTGCAGAGAACTTCAAAGGCGCCTGAGCTTTGAAGGTAAGACTGGAGAAAGTTACCGA TAAGCCAAGTGGAAGCCATGGATCCAAACCTATTGGCCCTCAAGGAGTTGAACCATGCGGGTGGATGCGCAATACCAATCATGGGA AAGACACGATCACCCGCAACTATCATCCCAATAACTCCCATCTGAGCAACGGGGACAACCTTAGCTAGAAGACGCTTTGGTGGTGG TGGTGGGTAGTTCGCAAGAACCACATCTAAACCGGGAAAAGCCGTCTCTAACATCTTCTTCATATTCACTGCAGTTCCCTTGAAAG AACAGGAGACGCAGAAGTTGATCTCCACAGTGTTTCCATATCCAACTGCTCCTCCTAAGCCACTTGCCTGTGAAGGAAAATCAGGA ACGACAACAGGCGGAGGCTGCTGGTGAGGGATGTGCGGTGGATGATTGGGACGGTGACTCGGAGGTTTGGGAGGCGGAGGAGTGAA AAGGTTGAAGAGATCCGAACAGAACAAGAAAATCGGTAAACCTATCAACAGCAATTGTGATCTGCCCATGGCGAATTATTATCAAT CTCCGACGGAATGACAGAGTCGGTAAGTCCACCCTCCGATCGAAGAAAGACCGAGAGAAATTTATTTAACCCTTGTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001032096 Selenoprotein, Rdx type [Arabidopsis thaliana]	1021	9e-109
XP_002864584 hypothetical protein ARALYDRAFT_495986 [Arabidopsis lyrata subsp. lyrata]	1011	1e-107
NP_200672 Selenoprotein, Rdx type [Arabidopsis thaliana]	1009	2e-107
CAN83419 hypothetical protein VITISV_024323 [Vitis vinifera]	772	7e-080
XP_002264265 PREDICTED: hypothetical protein [Vitis vinifera]	745	9e-077

Swiss-Prot top hits (Blast detail)	Score	e value
Q9STZ2 SelT-like protein	730	2e-076
Q9BN19 Putative esophageal gland cell secretory protein 6	221	2e-017
Q19892 Putative selT-like protein F28H7.4	195	2e-014
Q9VMV6 SelT-like protein	189	1e-013
Q9U3N5 Putative selT-like protein C35C5.3	181	1e-012

TrEMBL top hits (Blast detail)	Score	e value
Q8W1E5 AT5g58640/mzn1_90	1009	2e-107
A5BN73 Putative uncharacterized protein	772	5e-080
A9P9D4 Predicted protein	723	2e-074
B9IGA7 Predicted protein	715	2e-073
A9PGA5 Putative uncharacterized protein	705	3e-072

Arabidopsis top hits (Blast detail)	Score	e value
AT5G58640.2 selenoprotein-related	1021	4e-111
AT5G58640.1 selenoprotein-related	1009	9e-110
AT3G47300.1 SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding	730	2e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	4			67%


12	1			17%


10	1			17%

Unigene Members	Member information