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Information for unigene UN01735
FASTA Sequence |
Unigene ID: UN01735 | Length: 1338 |
SSR | | GGAGCACCAGTCGAGTAACTATAGATTTGTAGATCAGAATAATCTCGACATACTCTTGTCTTGAGCAAGATTCCAAGTTCAGATTA
GCTCAAGTATAAGGTCAATGGCGGCTGTTGGAATAGTCTGTGGACTACTGTCGAAATACTGGAGTTCCGATAAAGATGGAACCAAC
AAACAAAACCAGAATGCTTACACAACTGCTTGTGAAGAAGATCCAAAGCTCAAATCATATGGTTCTTTGTTTGAGCAACGATTCAA
CAAATTGAAGAGCGAGCTCGCTGCAGGAGGCAAAACTGAAAATTATTCCCTAAACTCAGTCAAGTCGCTGTGCGGGTTTCTAGTTG
AAATGAACGAAGATATGGCCGAGGAAATTACCGCCAGCAAAGATGTATTGGAGAACGAAGAACTAAGGTCTTTGGTTGACCTCTAT
TATGAGAGTTCCACGAAAACTTTAGATCTATTTAATACCGTGGAGAAGTGCACCAAGAAAGCAAAATTAAGCTTTTTGATCGTTAA
AGTTGCGATCAAAAAGTTTGAAAAAGAGTCGATGGACGACACGGATTTTGAAGGAAACCTGAAGAAGAAGAAGAAGAAGTACGCCG
AAACGTTAGTGGAGCTGAACAAGGTTAAAGCTATGGGCGATCCTTTTGGTGACGAGTATAAGAATCAGTTGGAATCTGTACGCGCG
GAGCACCTTGTGCTTTTAGAGAAGTACCATGAGATGGCGGTGAAGCTTGATGAAAAAAAGGGGAAATTAAAGGGGAGTAGACTGGC
GACTATTCTTTACGCTGCTGCGGCTGGGGTTGGGACTGGGTTGAACTACGTGATTGGAACTGCCGGAGTATTGGTCAATCAGATGA
TGAAGAACCGTGAGAAGGATTTGGATAGACAGAAGGAGGTGGTCAATATTAAGGGGGAAAACACGAAAGCCACCATCGAAGGCACA
AATACGATAAGTACTCTAGTCGAGAAGCTTATTACGGATATCTCATTGATTCTGGGGTCTACAGAGCTTGCTGTTGTAAAAAACGA
AGAGGAGGCCCTAAAACCTGTGATGGAAGCAGTCCTTTGCGAAGTGGATGCGTTTGCTACGGCAATCAAGGAAGTTGGTGAAGCTG
TGGCTACGTGTAGCACATGTGTAGCTTCGGGGAAAGTACAAGTTCTGGAACACATAACCAACTAAATGTCATCGAAAGGGAAGAAG
CAAACTACCCAATGTATTTAGACTTTTATATTTATGTTTGAAGTGTGCGAAACTCGTATTTTATGTGTGAGTCATAATGTAATATC
CCGAATTGTGATATGTGAAAGGGCTTAAAAGAATTGATTTGACTACCT
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GenBank top hits (Blast detail) | Score | e value |
XP_002865054 hypothetical protein ARALYDRAFT_920058 [Arabidopsis lyrata subsp. lyrata] | 438 | 6e-041 |
XP_002865055 hypothetical protein ARALYDRAFT_920059 [Arabidopsis lyrata subsp. lyrata] | 437 | 8e-041 |
NP_201467 uncharacterized protein [Arabidopsis thaliana] | 434 | 2e-040 |
ABK28300 unknown [Arabidopsis thaliana] | 434 | 2e-040 |
NP_201468 uncharacterized protein [Arabidopsis thaliana] | 431 | 4e-040 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q9LVR4 UPF0496 protein At5g66660 | 434 | 8e-042 |
Q9LVR3 UPF0496 protein At5g66670 | 431 | 2e-041 |
Q8GW16 UPF0496 protein At5g66675 | 368 | 3e-034 |
Q9LHD9 UPF0496 protein At3g28270 | 319 | 2e-028 |
A2XDK8 UPF0496 protein 1 | 313 | 8e-028 |
TrEMBL top hits (Blast detail) | Score | e value |
B7ZY19 Putative uncharacterized protein | 316 | 6e-027 |
B9SGH6 AT14A, putative | 316 | 6e-027 |
C5WTV3 Putative uncharacterized protein Sb01g043880 | 312 | 2e-026 |
B9SGH4 AT14A, putative | 305 | 1e-025 |
B9HEN1 Predicted protein | 289 | 8e-024 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G66660.1 unknown protein | 434 | 7e-043 |
AT5G66670.1 unknown protein | 431 | 1e-042 |
AT5G66670.2 unknown protein | 431 | 1e-042 |
AT5G66675.1 unknown protein | 368 | 3e-035 |
AT3G28270.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink). | 319 | 1e-029 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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