RadishBase

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Information for unigene UN01815

FASTA Sequence

Unigene ID: UN01815	Length: 764	SSR
GGGCCACCGTACGATCAATCATAGGGAACTAAGCAGGTCGTTCTCATCACTGCGTGCGCCAAGCTTTTCCGTTCGAGAGAAAGTAA GGAAAAGGCGAAGTAACTAAGATGGATGCGAATCAAGTAGCAGAGCTCCGAAGATTCATCCAACAGTTGAAACTGGATCCTTCTCT CCTCCACGACCCTTCTCTCACTTTCTTCAAGGATTATCTCCAAAGGTCATTTTCATTTTCATTATTCTCTCACTTCTTCCGTTTGA CTTTTTTGTTGTTCTCTCTCTCTCTCTCTCGTGCAGTTTAGGAGCTCAACTTCCCAAGATAGTCAAAACTGAAAGAGATTATGAGG ATACGGCTGAGACTAAACCTAGCTTCTCTTCTGAACATGATGATGATGATGAAATCACCGAGTCTAATGTTGAGCTTGATGAGTCT GATGTTGTTGAACCAGACAACGAGCCTCCTCAGCAGATGGGAGATCCTACAGCTGAAGTGAGGGATGAAGATAGGGATGCTGCTCA GTCTGAGAAGAGCAAAGCTATGGAGGCAATCTCTCAAGGAAAGTTCGACGAGAGTATTGATCATCTAACAAAAGCCATCATGTTAA ACCCCACTTCTGCTATTCTCTACGCCTCTAGAGCTACTGTGTTTCTAACTGTTAAGAAACCAAATGCTGCGATCCGCGATGCGGAC ATGGCATTACAGTTCAACCCTGATTCAGCTAAGGATACAAGCAAGAGGTATGGCTAGGGCATGTTAGCCATGGGAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_188415 TPR repeat-containing thioredoxin TDX [Arabidopsis thaliana]	600	4e-060
AAM60989 tetratricoredoxin [Arabidopsis thaliana]	600	4e-060
XP_002883093 tetraticopeptide domain-containing thioredoxin [Arabidopsis lyrata subsp. lyrata]	594	2e-059
NP_001078175 TPR repeat-containing thioredoxin TDX [Arabidopsis thaliana]	550	3e-054
BAB02710 unnamed protein product [Arabidopsis thaliana]	454	3e-043

Swiss-Prot top hits (Blast detail)	Score	e value
Q8VWG7 TPR repeat-containing thioredoxin TDX	600	2e-061
Q93YR3 FAM10 family protein At4g22670	423	6e-041
Q6ES52 TPR repeat-containing thioredoxin TDX	378	1e-035
P50502 Hsc70-interacting protein	323	2e-029
Q5RF31 Hsc70-interacting protein	323	2e-029

TrEMBL top hits (Blast detail)	Score	e value
B9I2C7 Predicted protein	450	7e-043
B9SXR7 Hsc70-interacting protein, putative	444	3e-042
C6TL93 Putative uncharacterized protein	422	1e-039
Q93X83 Hsp70 interacting protein/thioredoxin chimera (Fragment)	413	1e-038
B9IEF0 Predicted protein	409	4e-038

Arabidopsis top hits (Blast detail)	Score	e value
AT3G17880.1 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding	600	2e-062
AT3G17880.2 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor / protein binding	550	1e-056
AT4G22670.1 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1); binding	423	6e-042
AT2G42810.1 PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase	127	1e-007
AT2G42810.2 PP5.2 (PROTEIN PHOSPHATASE 5.2); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase	127	1e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			50%


12	1			50%

Unigene Members	Member information