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Information for unigene UN01908
| FASTA Sequence |
| Unigene ID: UN01908 | Length: 704 |
SSR | | GAATACATTTTCTTACACATGTTCACCTTCAAGCATTTACTTGGTCTCAATGCATTTATTAATGTCTTAGGTTTAGCAGATAGCTT
TTGATTGCATACATTATTGAGAAACAGAGAGAGAGAGGCACATAAGATTACAAGGAGCTTAATTAAAGAGAGTGACAGAAGAGAGC
AAGCAAAGCCTGTTTCATTAACATTCAGAATCACGGCCGTTTTATTCATTTGTGCTCTTCCGCCTTCTCTCATTGTGTCCAGCTAA
GCGTCTCCTGCAACTCCGCTTGGCTTCATCAAACTCACGCAGCTCGTGAAACCTGCTACATTGTTGGCAGAAGCGTTGGTAACCAC
CAGAGATCCGAACAGCAGGAGCTTTGGCATGAAACTCGCAGACTTTGTGTCGTTTGTGGTACTGTTTGGCTCTGCTCATATCCGCA
GTGCATCGCTCGACCTGACAAGAAACTCCACTACTAGTGCTACTACTTGTAGCTCTGCCTTTCTGCTTCTTCTCTATAGCCTCTTC
TTGTTCCTGTTCTCCTCCGTTGTCTTCTTCTTCAAATGCATCCTCGTCTTCTTCCTCTTCCTCACTCATTTCTCTTAAACTCCTCT
TTCCGTCTGCGTTGCTTCTTCTCACACTCATCTTCAAAGTATTACTCTCTTTCTCTCGCTCTTTCTCTCACATGAATGATATAACA
AGAGGAGAAGATGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565771 squamosa promoter-binding-like protein 3 [Arabidopsis thaliana] | 500 | 1e-048 |
| AAM67271 putative squamosa-promoter binding protein [Arabidopsis thaliana] | 496 | 4e-048 |
| XP_002879473 hypothetical protein ARALYDRAFT_482334 [Arabidopsis lyrata subsp. lyrata] | 495 | 5e-048 |
| CAB94233 Squamosa promoter binding protein-like 3 [Arabidopsis thaliana] | 492 | 1e-047 |
| XP_002509450 Squamosa promoter-binding protein, putative [Ricinus communis] | 435 | 5e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P93015 Squamosa promoter-binding-like protein 3 | 500 | 6e-050 |
| Q38741 Squamosa promoter-binding protein 1 | 368 | 1e-034 |
| Q9S758 Squamosa promoter-binding-like protein 5 | 368 | 1e-034 |
| Q9S7A9 Squamosa promoter-binding-like protein 4 | 358 | 2e-033 |
| Q38740 Squamosa promoter-binding protein 2 | 331 | 3e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RBB6 Squamosa promoter-binding protein, putative | 435 | 3e-041 |
| B9N3H7 Putative uncharacterized protein | 410 | 3e-038 |
| B9T4B7 Squamosa promoter-binding protein, putative | 387 | 1e-035 |
| A1YWL8 Squamosa promoter binding protein-like protein | 378 | 1e-034 |
| Q84JE4 Squamosa promoter binding like-protein | 373 | 5e-034 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33810.1 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding / transcription factor | 501 | 5e-051 |
| AT3G15270.1 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor | 368 | 1e-035 |
| AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor | 358 | 2e-034 |
| AT1G53160.1 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor | 358 | 2e-034 |
| AT3G60030.1 SPL12 (squamosa promoter-binding protein-like 12); transcription factor | 331 | 2e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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