RadishBase

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Information for unigene UN01926

FASTA Sequence

Unigene ID: UN01926	Length: 1178	SSR
GCAAAATAAACTCTTAACTTATTTAGTCAAGGGAAGATGAAACTAACACATCATTTTGACCTTCCAGAAAGACAAAGGCATATAGA AAATACTGCTAAAGCTCACACACACACATTACACAAGGACACATGAAGTCCAACGAAAGTAAAAGCATATGCTTAAAGGAGGGCCA TTAACGAGTTTGAAAACGGTTTAGAAACACAGATCATGCTAATAATAATAGTACGGGTCAAAGTCAGAATTGTCACTAGCATCTGA GAGGTCATCATAGTAAAACTCATCTTCTGACATTATATCAACATCAGATAAACCATACAGGTCGTCATCGTCGGATGAACACACGT CATTAACCGTCGCATCGAATGGGTAATCATGAACCGAGTCATTAGGGCGTCTCACAACTTTAATCTTCTCGAGACACCGCTTCTCC AGATCCCCAACAAGGTTAACGTTGAAACACTGGCGCAGATCAAGATGTTCCAGGTTAGGACAACCCTCAAGAACGGCGTTTAACCC AACGTCTGTTAACCTGTCCCCGAAAAGCTGGAGGTGGCAAAGTCCGGGCATAGTTTCAGCGATCGCCAGCGCAACATCATCACATT CATCTCGAGGACGCTTGTAACCCACGCAGTTTTTCTTCAGAGTCTTGAGATTCGGACAAGACTGGCCTACAACTTTAAGAGACTCT CCTGATACGGAGCAGTATGAAACCTCGAGTACTTCAAGCAAGGGAAGTTTCGCAACTGCTTCCGTAAGTCCCTCGCTTGTTATTTC ATAGCACATTGCAACTTTAAGGCTTCTCAGGTCACTTGAACTATCGGCGATGTAATTGAGGAGAGAATCAGTAGCGAAGTGGCAGA GATTGATCTCAGCCAACTCGCCACGGCTAAGATCAACTGCGTGACGGCACAATTTCTCGTAGTACTTGTCTTCACAGTCTCCGAGG TTACTCATGTCGATTTCGCGCCACATCGAAGGGTCTTTACAGACGCGACGCCACGATCTGCACACTTTCTGAGCGGTTTCCACTAT CTCGATCGCGCCGAGCCGGTGGAGAATCGATGACGTCAACTCCGGCGGAAGCTCCGCCCAGTTCGCGTAGTCTCCTTCTTGCATCG CCGTAGGAGAGGGAGACGAAGAAGCCATTCTATGGATCGAAATTATGTCAAAATGTGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002874842 F-box family protein [Arabidopsis lyrata subsp. lyrata]	996	1e-105
NP_567294 F-box protein SKIP19 [Arabidopsis thaliana]	962	9e-102
AAM65310 F-box protein family, AtFBL20 [Arabidopsis thaliana]	958	3e-101
XP_002874843 hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]	854	3e-089
XP_002863254 hypothetical protein ARALYDRAFT_332995 [Arabidopsis lyrata subsp. lyrata]	840	1e-087

Swiss-Prot top hits (Blast detail)	Score	e value
Q9M0U9 F-box protein SKIP19	962	4e-103
Q9S9V9 Putative F-box/LRR-repeat protein 23	778	8e-082
Q9S9V8 Putative F-box/LRR-repeat protein 9	725	1e-075
Q9M0U6 Putative F-box/LRR-repeat protein 22	721	3e-075
Q9M0U7 Putative F-box protein At4g05480	423	1e-040

TrEMBL top hits (Blast detail)	Score	e value
A5ALT6 Putative uncharacterized protein	831	9e-087
B9SKT5 Ubiquitin-protein ligase, putative	745	9e-077
Q9SY41 Putative nodulin	585	3e-058
Q9FHB4 Nodulin-like protein	540	5e-053
B4G0W0 Putative uncharacterized protein	501	2e-048

Arabidopsis top hits (Blast detail)	Score	e value
AT4G05460.1 F-box family protein (FBL20)	962	3e-104
AT4G05497.1 F-box family protein	725	1e-076
AT4G05490.1 F-box family protein (FBL22)	721	3e-076
AT4G03630.1 root nodule development protein-related	585	2e-060
AT5G52480.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL20) (TAIR:AT4G05460.1); Has 566 Blast hits to 531 proteins in 61 species: Archae - 0; Bacteria - 6; Metazoa - 200; Fungi - 34; Plants - 283; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).	446	2e-044

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			67%


6	1			33%

Unigene Members	Member information