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Information for unigene UN01956
| FASTA Sequence |
| Unigene ID: UN01956 | Length: 808 |
SSR | | AAAAAAAACTTTTTTTTTAACCATAAGAAACCACAATTACAGCTATAAAAAGGAGAGATCACACATAACTCAAGTTTTTACATTTT
CCAATATCAAACGACTGTTAAGTCAAAAGCTGAAAAAGGGCTTGAAGCAACAAAAAATACACACACACACACACAAGAGCTTCAAG
ATCGCAACAAACAGAAACTCAATTTGCATTACTTGTGATTCATGCGCAAACCACCGGATCAGGTCAAACAAACAAAAAAAAAAAAA
ATCAAGAAGTGTTGAAGAAGAATCATATCTAAAACCATTGAGATTGGCTTATAGCTCGGTGTCGCAGAGACGGATCATGATTTCAG
AGACCATTCTTCGTGCAAAGGGGATATAACTGAGGCTGTACCAAATAAGTGCACAAGTCTCGCATAGAATCGCAATCACTGTCAAA
ATTTTGCTGTGGATCAAGAGAGCGCAAAAGAGAGCAAGGAGGACGCATCCACCATAGATAGAGGTAGCGTAGAAACGAACAGGGTC
CAACATCATGTTTATCTGTTGCTCAGGTCCCATGAGGAAGGCTATGCTTCCAATAGCGAGAACATTTCCGAATGTGAAGAGCAGTG
CAAACTTGATGGGGATTGCAAACACGATCATGGACAGAAACATGAGAAGCAAACCAGCGGCCAAAGACGCGGCGAATCCGTACATT
CTCTGAGTTGTGGAGAGAGAACAGAGACCCTCCGATCCATCTTCAAGGAAGCTATCGTTTGTCTGTTCGCCAGACAAGAACTCGTT
CAGCTTCTGCATCTTGTTCCGATGATGATCGGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874175 hypothetical protein ARALYDRAFT_489277 [Arabidopsis lyrata subsp. lyrata] | 706 | 2e-072 |
| NP_197805 Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana] | 692 | 1e-070 |
| XP_002318402 predicted protein [Populus trichocarpa] | 597 | 1e-059 |
| XP_002321435 predicted protein [Populus trichocarpa] | 589 | 9e-059 |
| ACJ84171 unknown [Medicago truncatula] | 578 | 2e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O95562 Vesicle transport protein SFT2B | 265 | 1e-022 |
| Q8VD57 Vesicle transport protein SFT2B | 252 | 5e-021 |
| Q4FZV2 Vesicle transport protein SFT2B | 233 | 7e-019 |
| Q8WV19 Vesicle transport protein SFT2A | 214 | 1e-016 |
| Q5SSN7 Vesicle transport protein SFT2A | 209 | 5e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6GKX4 At5g24170 | 692 | 7e-071 |
| B9I596 Predicted protein | 597 | 7e-060 |
| B9IDV3 Predicted protein | 589 | 6e-059 |
| B7FHE2 Putative uncharacterized protein | 578 | 1e-057 |
| Q9FIP2 Genomic DNA, chromosome 5, TAC clone:K12G2 | 566 | 3e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | 693 | 3e-073 |
| AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | 427 | 2e-042 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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