RadishBase

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Information for unigene UN01971

FASTA Sequence

Unigene ID: UN01971	Length: 697	SSR
GACTATTCTATGCTGCTTTGCTTTCTCTATCCACATGTCTTCACATCGAAGGAAGAAACGAGATGAGTGTGCTCACAGTTATATAA TCAAAATCATAGACATACAAATCACAGTGCTGAAGCAGAGTATTTGAAACTCCAAAGACAAAGTCACTCTAAAAAAAATCTGATTA TAAAGCAGGCAAAAATTTTACAGACGAACGATGATAGTGTTTGGGATCATGCAAAGGCTCGAGGAGTTTTGTGTGTGTGTGTTTTT TGTTGTTCTAACAAAGCATCCTCCTGATTGCTGTTGAGCCAAAGATGCATTTGCATTGGAAGATTTGAGATTGACATCAACCATGT CCTCTTGCTTTGTCGAAGACAGTGTTTCCGTTCCTGGCAAAGCTGCTGCTATCTTACGGAAAAGCGCCTTAATGTTGAAGCCTGCT TTGGCACTGGTTTCGATAAACATCACATTAAGCTCACGAGCCTTAGCTTCTGCTTCCTCTATCGACACTTGCCTTTTGTCCACAAG GTCGGTTTTATTTCCCACAAGTACAACAATGACGTCACTACCACGCTCGGTCCTAACCTCATCGATCCACTTAGTAGTGTTTAGGA AGGATTGCCTGCTTGCAACATCATAGACAATAACAGCCTGACAGTTCGGTCTTCAAGGTACATTGTCTTTGATAGAAAATCAATAC CAATCGTGG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_181989 Ras-related protein RABH1B [Arabidopsis thaliana]	590	5e-059
XP_002526504 protein with unknown function [Ricinus communis]	555	6e-055
XP_002302484 predicted protein [Populus trichocarpa]	553	9e-055
AAA74117 putative [Nicotiana tabacum]	552	1e-054
XP_002266653 PREDICTED: hypothetical protein [Vitis vinifera]	546	6e-054

Swiss-Prot top hits (Blast detail)	Score	e value
O80501 Ras-related protein RABH1B	590	2e-060
Q1KME6 Ras-related protein Rab-6A	398	4e-038
P20340 Ras-related protein Rab-6A	396	7e-038
P35279 Ras-related protein Rab-6A	396	7e-038
Q5RAV6 Ras-related protein Rab-6A	396	7e-038

TrEMBL top hits (Blast detail)	Score	e value
B9SKH4 Putative uncharacterized protein	555	4e-055
B9GP45 Predicted protein	553	7e-055
Q40525 Nt-rab6 protein	552	9e-055
Q8H4Q9 GTP-binding protein Rab6	531	2e-052
B9SS18 Putative uncharacterized protein	529	4e-052

Arabidopsis top hits (Blast detail)	Score	e value
AT2G44610.1 RAB6A; GTP binding / protein binding	590	2e-061
AT5G10260.1 AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding	491	7e-050
AT2G22290.1 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding	447	8e-045
AT5G64990.1 AtRABH1a (Arabidopsis Rab GTPase homolog H1a); GTP binding	413	7e-041
AT4G39890.1 AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding	395	9e-039

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			33%


7	2			67%

Unigene Members	Member information