Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN01982

FASTA Sequence
Unigene ID: UN01982Length: 1175 SSR 
GACACAAATGTCATTAGGCTCAATCATCAAATCAGAGGAACTCTTTGTTTTAAAACCAAAGTGAGAAACTAGACAAAAGAACACAA
AATGCCTAAGAACTCAAGTAACCAAACAACATCATCAAATGACAGAGGAGTTCTCGTGGCCGACAACTCTTCCTCTTCCATCTCCA
CTAGGGCATCCAGGTCTGAACATTTTTTCCAGAGATTCAATAAACTATCCTCCATTTCCTGTAGCCGAGCCACACAAAACTGTTCT
TTCTCCTTCTTTACTTTCACATGGTCCAACTTCTTCTCCAACCATTCCACCTTAAAACCAGCGTCTTTCAAGTACGTCAGTGCAAC
ATCTGCTTCCACAAGATCTTCACTAGAGAGCTCCTCGAGTGATTGGCATAAAGTCTCGATTAAGCTGAGCAGGAAATCCATGCATG
CTTTCCTCAGATGTTGGTTCTTTGCACGGAACTCTACTGCAATGTCCGGATGTCTTTTAAAGATAAGTCTTACAGCTTCTACCTGT
GAAGGAAGAACTTGAAAGCCACTAACATCCATGCTTTCCTTTTCAGATTTGTCTGATGCATCTGAGTATCGTTTGCAGACACCATT
CACAAATGGGCTAAAGATAAGAGAAGGGCAAGAGGAGAGACTCTTTATCAGCCAAGTCAACTTCTTATCACCTTTATTTGCCATGA
AGATTCCTCACAGTTGAAACCTTCCAAAGTCGTGTAGATGGAAAGGAGAGAGACACTGAAGAGCTTCAAGAGCTTTCTTGATGTCG
AGAAAGATCAACACATTAACATCTCTTCTCATGCCTTGCCGAGCCAGTTCTGCAGCTTCTTCTTCTTCTTTTCTACGAAATCAGCG
AGAGCTTGTTTGCATTGCAGACGAGCTACATAGTGTTTTGCAGACAAAGTAAGAACCGAGGAAGCATGTAATAATCACTATGTGTC
CAAAACCAATAAATCCAATGTCCTGAAGTGTCGCCATCTGTTTATCCCAGCTGATACACCAATGTCCTGAAGTGTCGCCATCTGTT
TATATATTTCCTCTAACTAAGAACTCAACCTGGTCGCAATCCGAGGGCGGAATCGAGAGAGTGATGAAGAAGAAGGAAGCAAACCG
AATTGAATCTTCGCATGATTCGATTCGAAGCAGAGAGAGGAGAGGTTTTTGGTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191400 TRAF-like family protein [Arabidopsis thaliana]6008e-060
CAB68181 putative protein [Arabidopsis thaliana]5802e-057
NP_191402 TRAF-like family protein [Arabidopsis thaliana]5802e-057
XP_002878218 hypothetical protein ARALYDRAFT_907321 [Arabidopsis lyrata subsp. lyrata]5443e-053
XP_002878221 hypothetical protein ARALYDRAFT_486292 [Arabidopsis lyrata subsp. lyrata]5353e-052

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9M2H5 Putative uncharacterized protein F9D24.3206006e-060
Q9M2H3 Putative uncharacterized protein F14P22.205801e-057
Q9M2H2 Putative uncharacterized protein F14P22.304788e-046
Q9M2J5 Putative uncharacterized protein F9D24.1204707e-045
Q9M2I2 Putative uncharacterized protein F9D24.2504501e-042

Arabidopsis top hits (Blast detail)Scoree value
AT3G58410.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein6003e-062
AT3G58430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT3G58410.1); Has 507 Blast hits to 381 proteins in 80 species: Archae - 4; Bacteria - 42; Metazoa - 44; Fungi - 15; Plants - 295; Viruses - 3; Other Eukaryotes - 104 (source: NCBI BLink).5807e-060
AT3G58440.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein4784e-048
AT3G58210.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein4704e-047
AT3G58340.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein4525e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information