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Information for unigene UN01994
| FASTA Sequence |
| Unigene ID: UN01994 | Length: 631 |
SSR | | AGATTGAAAAACATATAATACCTCCATGGAATTTTTTAACAGTCATGAGTAAAAAAGAACATCATTGTTATGTACATACAAAGCAG
CGAGAAATGAAATGCAGAGAAAGACACAAATCGAAGAGCTAGAACATGAGACAGTACAAGGCAACAAGAAGTGAACCAAGATTCTT
AGTTTCTGGATGTTTTGTTCTTTTATCAGCGAGAAGAACCATAAGATCTTGAGTAGACATTGTTCTCACCAGACCCAGATGATCCA
GATGCCGAAGAAGAAGACGAAGAAGAAGAAGAAGAGAAGAAACCACTGAACGGCCATGGAATCGAGAACCTTCTCCCATTCCCACT
CCTCGCATCATCCTCTCTTCCTCTCTCCCCCACATTCTCAACAACCTCTCTGTCACTACTCTCAGGAACACTTCTCGTCCTCGCTC
CTCCTCCCCCTGACTCAACCTTACTCTCACCATCACCATCATCATTACCAGAAGGAAGCTCGAACCGACACACGGGACACGAGTTA
TGAAGCTCGAGCCAGGGGACAATACACTTGACATGAAACTTATGCTTACACGGCATCTCTTTCGCTTCATCAACGCCTCTCTCAAA
ATCATCCAAACAAACCGAACACTGCAACG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002864451 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 535 | 9e-053 |
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 502 | 6e-049 |
| XP_002867566 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 338 | 6e-030 |
| CAA18230 putative protein [Arabidopsis thaliana] | 333 | 2e-029 |
| NP_194370 RING/U-box domain-containing protein [Arabidopsis thaliana] | 333 | 2e-029 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q7ZW78 E3 ubiquitin-protein ligase RNF181 | 174 | 3e-012 |
| Q9P0P0 E3 ubiquitin-protein ligase RNF181 | 169 | 1e-011 |
| Q6GPV5 E3 ubiquitin-protein ligase RNF181 | 166 | 3e-011 |
| Q3T0W3 E3 ubiquitin-protein ligase RNF181 | 165 | 4e-011 |
| Q0II22 RING finger protein 126 | 164 | 5e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 502 | 4e-049 |
| O65594 Putative uncharacterized protein AT4g26400 | 333 | 2e-029 |
| Q8L5Z3 AT4G26400 protein | 333 | 2e-029 |
| C5WXH6 Putative uncharacterized protein Sb01g018800 | 262 | 3e-021 |
| A2Z8Q8 Putative uncharacterized protein | 261 | 4e-021 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 511 | 3e-052 |
| AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein | 334 | 9e-032 |
| AT4G26400.1 zinc finger (C3HC4-type RING finger) family protein | 334 | 9e-032 |
| AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein | 300 | 8e-028 |
| AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein | 244 | 2e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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