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Information for unigene UN02192

FASTA Sequence
Unigene ID: UN02192Length: 1229 SSR 
GCTCTAAAACTCGAACCCGACCCGGATAACCCGGGTCGGTTCCTCGTCTCCTTCACGTTTGATGCTACCGTCTCTGGAAGAATTAC
AGTTATTTTCTTCGCTAAAGAAACCGAACAATGCGTCCTCACAGCTACAAAGGAAGACACTTTACCACCGATCACAATGGATTTCG
AGAAAGGCCTCGGTCAGAAGTTCAGACAGCCTCCCGGTTCGGGCATAGATTTGTCGTTATTCGAAGACGGTGAGCTCTTTAAGGCG
GCGACGTTGGAGACTGATGTGTATCCGTTGGCGGTTAAGGCGGAAGCAGCAGTTACTTCTTCAGAAGAAGCAGAAGAAGAGGAGAG
TAAGAACGCGCAGATTACTCAAGCGGTTTACGAGGAGGAGAAAGGAGAGGTTAAGATAAGAGTGGTGAAGCAGATACTATGGGTTA
ACGGGACTAGGTACGAGCTGCAAGAGATTTATGGGATTGGGAATACGGTTGGTGGGGGTGACGATGATGAGGCTGATGATGATGGT
AATGATCCGGGGAAGGAGTGTGTTATTTGTTTGTTTGAGCCGCGAGACACTACTGTTTTTCCCTGTCGACACATGTGTATGTGTAG
CGGATGTGCTAAGGTGTTGAGGTTTCAGACGAATCGGTGCCCGATTTGTAGGCAACCTGTTGAAAGGCTTTTGGAGATACAAGTTC
ATGGTAATAGTGGGAGCGGGAATAATACAGAGCAAGGAGGAGGAACAGCTGAACAAGAGTAACCAAACATATCTTATATGCATGTT
TGATCCATGTGTAACATGTTAACAATAAAATGTCCTGATTCCCAATTTTATAATATAAAAATATCAAAGGCATCTTGATTCACTAT
TAGGATCATCCTTCAATGTTATTCACACAAATACAGCAAGAAACAAGTGCGCACACACACACACTGACTCAGGGTAAAAAACGGTA
ATAGCAGAGGGGTAAAAAAGAGTCTCTCGTCTTCATCTCATTACTTCAGTACATTGTATAAGTATGCAGCGATACCCAACACAATA
CACAACAAAACAATATCGATGCAAAAGTTCCGGCTTGACCTCAGCTGATTCACAGTATCTTTAAGTCTAACATTGGTGTTCTTAAA
ATCCGAGGTTGCTCTGTCCACCTTGGAATCAATTTCATCCATCAAAGGAACTTGCCGATCCAGCTCCTCGTTCATATCAGACGCCA
TATTCTTCAAAGCATCTAAACCTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_566356 RING/U-box domain-containing protein [Arabidopsis thaliana]10515e-112
XP_002884754 hypothetical protein ARALYDRAFT_478299 [Arabidopsis lyrata subsp. lyrata]10264e-109
XP_002326350 predicted protein [Populus trichocarpa]8185e-085
NP_850547 RING/U-box domain-containing protein [Arabidopsis thaliana]8095e-084
NP_566354 syntaxin-71 [Arabidopsis thaliana]3921e-035

Swiss-Prot top hits (Blast detail)Scoree value
Q9SF29 Syntaxin-713925e-037
Q6INH1 RING finger protein 1573316e-030
Q94KK5 Syntaxin-733281e-029
Q3TEL6 RING finger protein 1573244e-029
Q96PX1 RING finger protein 1573219e-029

TrEMBL top hits (Blast detail)Scoree value
Q9S752 Putative RING zinc finger protein10513e-112
B8BG37 Putative uncharacterized protein8292e-086
Q8RUJ8 Os10g0204100 protein8292e-086
B9MTB3 Predicted protein8183e-085
Q3EBA3 Putative uncharacterized protein At3g09770.28094e-084

Arabidopsis top hits (Blast detail)Scoree value
AT3G09770.1 zinc finger (C3HC4-type RING finger) family protein10521e-114
AT3G09770.2 zinc finger (C3HC4-type RING finger) family protein8092e-086
AT3G53410.1 zinc finger (C3HC4-type RING finger) family protein7213e-076
AT5G19080.1 zinc finger (C3HC4-type RING finger) family protein5842e-060
AT3G06140.1 zinc finger (C3HC4-type RING finger) family protein5484e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
71  33%

Unigene MembersMember information