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Information for unigene UN02200
| FASTA Sequence |
| Unigene ID: UN02200 | Length: 1406 |
SSR | | GGAAGAAACTCAAGAACATTATAAAATTACAAGTAAGCAAACACACAATGATTTCAACAAAAAAACAGTCAAACAAGGACGTGAAG
ATTCAACTAAAAACAAACAAACAAACCAAAACACATCAGCAAAAATTTGACGAAAGATTATTAGATTGAAGACAAAATTTCATTTT
TCATTAATTCAAAACTCTACATTGAGGCAACACTATTCTCGCATCTGAATCCTCTTTCACCAGCAACCACACTTCACAATTTGGAG
TGGAGCAAGTGATAGCACACAAGAACATATGGCAGAAAGGTGGTGACAGGACGATGACGGTAGTTACAAGCGGACGAGAATGAGTT
CAGTGGTGATTCCAAGGAGGTGACGACGGTGTTACAAGCGGCGGAGACAACGACAGTGGGTACCAGTTCGATTGATGTTGATGTTC
TACAAATGAATCTCTCGCTTTGTACACATTACTATACGTTCCTGGTTTAAACTTTTCAATCTTTCCACAAGAATCAGTTTTTCTTG
GAAGCCATTGCCTTTAGGTTTTCTCTCTTTGGCTTCTGTCACAGCATTGCTATCATTCCTAACTTCCTCACTTTATTTGCTCAACA
TGTTTCTAAAAGAGATCTCTTTAGAATCAGCTTTAATTTATGATCAAGGAGGAGTGTAATTGGCGACCCAAATGGTCAAATCTAGA
ACTTGCAGAGATTCATACCTAATTTTCAGACAGAAACGGAGGTCCTGGACTGAAACCGAGAGAAAGATGTGACGGTGGTGAAGAAC
AGAGCCCTTTGCCAAAGTTTAACGAGATGATGACTGGTTCAAACTCTTTGCTGGAGATCTTTGCCGGAGCTAAAGGAGAGAGAGAG
AGAGAAAATGATTCCATCCACAAGAGAGAGAGATGACTAGTTCAAGCCTTTTAAAATAATTATATAAGTCACTCCACCCTTAAATC
GTCACCGTCTTCCGTCTCTATTGTCCCTGACCACCTCCATCGTCACCTCCGCACAATCCGGGCTGCCATCAACCACCTCACAAACC
ACCAGCCAGATAAATCCACTTTAATTGCTTCCACCGTCTCCTCCTTCGCTCTAAATATCTCTTCATCTACTCTAAACTCTCCCCCA
TAGCTTCCACTTGCCATAACTACCATGACCTCCTCCACAAGTACATGGACTACACTCCTCTCTCTCTTTGCCTTTCCGACACCGAT
CTCGTAGAGAAGCTCATCCTCCATGGCTGCCACCCACTCCCTCGCTTGCGTTGTTATACTGGTGCCAGATTTAGAAGATTTAGCTG
CTGATTGAGTTTCTTGTTCTTCATCGATTAGGAAGTGTTGAGGTTTGTGAAGGGACCGAGAGGTTTCTGGATTTTGATTAGAAATT
AGATTTTTGAGAAAGTGAATTGAGGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_174272 putative methyltransferase domain-containing protein [Arabidopsis thaliana] | 264 | 1e-020 |
| XP_002890831 hypothetical protein ARALYDRAFT_473184 [Arabidopsis lyrata subsp. lyrata] | 264 | 1e-020 |
| XP_002331852 predicted protein [Populus trichocarpa] | 227 | 2e-016 |
| XP_002519740 conserved hypothetical protein [Ricinus communis] | 226 | 3e-016 |
| XP_002316738 predicted protein [Populus trichocarpa] | 225 | 3e-016 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RWB7 At1g29790 | 264 | 7e-021 |
| B9N9B7 Predicted protein | 227 | 1e-016 |
| B9S171 Putative uncharacterized protein | 226 | 2e-016 |
| B9I111 Predicted protein | 225 | 2e-016 |
| A5BSC2 Putative uncharacterized protein | 202 | 1e-013 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G29790.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 264 | 4e-023 |
| AT1G29790.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 264 | 4e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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