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Information for unigene UN02270
| FASTA Sequence |
| Unigene ID: UN02270 | Length: 1237 |
SSR | | GGACCACTTTGACAACCAAACCGGCCAAATCCCTTCGGAATCCGAAATCGCAGAAGAAGTGGACTAACAATGGCGGTCCTCGAAGC
TGCTCTCTCCATCCTCTCTCTCTCTTTCTCCTCCTCTTCTTCTTCTTCTTCGTCCTCCTCCTCATCCTCAAAACCTCATCTCTTCT
CTAGGCAAACTAAACCCATCTCCTTAAGTATTCGAACTCCCACTAACCTCTCTCCCGTCTCCCCTCTCAGTATTCCTCTTCGTGCT
CGGCGAATCGTCTCTGTATTCTCTTCCGTCGCGGAGGAAGAAACTTCCCTTACGGATGAGAAGACCGAAGAAACCACCCAGACGAC
GAATCTCAAAAGGAAGCTCTTTGTGTTCAATCTCCCCTGGTCTATGAGTGTTAACGACATCTCCAACCTCTTCGGACAATGCGGGA
CTGTCTTAAGCGTCGAGATAATAAAGCAAAAAGATGGGAAAAACAGAGGTTTCGCTTTCGTGACCATGTCTTCTGGTGAAGAAGCT
CAATCCGCTGTTGAAAAGTTCGATTCTTTCCAAGTCTCAGGGAGGATCATAAGGGTTAACTTTGCAAGAAAGTTCAAGAAGCCTCC
TAAGCCCCTTCCTCCTTCTGCTACCTCTTCCCCTGGAGAAACACGTCACAAACTCTACGTGTCTAACCTCGCTTGGAAAGCGAGAT
CAACTCACCTCCGCGAGTTCTTCACTGCTGCTGACTTCAACCTGGTCTCAGCTCGTGTTGTTTTCGCTGACCCTGGAGGTAGAGCT
TCTGGCTATGGCTTTGTCTCGTTCCTTACTAGAGAAGAAGCCGAGGATGCAATCTCTAAACTCGACGGGAAGGAGCTTATGGGCAG
ACCTATCAATCTAAAGTTTAGCTTGAGAAGTGCTGGTGAATCTGAAGATAGTAACACAATAGAAGACAACAATACTTCTGAAGAAG
AACCTGAAGAGGCTAGTGACACAACAGAAGCCTCTGAAGAAAAACCTGTGGAGTGATGATGACTCTTATTCTTTCTCAGTTTATTC
TTCACTACACATCTTTATTACAAGTTTTGAATATGTAAGAACACAAAAAGTAGAATTTATTGGCAAACTAAGACTTCAAAAATCCT
TGCTAATGTAATGATGAATCAATCACCAAGCCGTTCCGTATCCTGTAGCTTCATCATACCTAGTAAGCTCATCAAACGAGGCGCAG
CTTCCTGTTTGGTAATGTCTTCCTTTGATCTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879549 hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata] | 997 | 8e-106 |
| NP_181084 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 972 | 7e-103 |
| XP_002279685 PREDICTED: hypothetical protein [Vitis vinifera] | 745 | 1e-076 |
| CBI33876 unnamed protein product [Vitis vinifera] | 732 | 4e-075 |
| XP_002527668 ribonucleoprotein, chloroplast, putative [Ricinus communis] | 713 | 7e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P19684 33 kDa ribonucleoprotein, chloroplastic | 326 | 2e-029 |
| Q04836 31 kDa ribonucleoprotein, chloroplastic | 281 | 4e-024 |
| P31209 Polyadenylate-binding protein, cytoplasmic and nuclear | 212 | 4e-016 |
| Q4VXU2 Polyadenylate-binding protein 1-like | 195 | 4e-014 |
| O64380 Polyadenylate-binding protein 3 | 190 | 1e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82299 Putative chloroplast RNA binding protein | 972 | 5e-103 |
| B9SNU9 Ribonucleoprotein, chloroplast, putative | 713 | 5e-073 |
| B9MU33 Predicted protein | 674 | 2e-068 |
| A9PK26 Putative uncharacterized protein | 673 | 2e-068 |
| C6TEI0 Putative uncharacterized protein | 654 | 3e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 973 | 2e-105 |
| AT4G09040.1 RNA recognition motif (RRM)-containing protein | 420 | 3e-041 |
| AT4G09040.2 RNA recognition motif (RRM)-containing protein | 372 | 9e-036 |
| AT3G52380.1 CP33; RNA binding | 319 | 1e-029 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 295 | 8e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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