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Information for unigene UN02280
| FASTA Sequence |
| Unigene ID: UN02280 | Length: 1185 |
SSR | | GGAAGTTCGTCGACGACGGTTTCTGGCTTTCACTGTTTTTTTCTTCTCTTCCAGCTACAGCTAATTTGAGCAATGGAGATTGACAG
AGAAGATGGAAGAAGGCCGAATCAGCTGAGACCCCTTGCTTGTTCCCGTAACATCCTTCATCGTCCTCATGGCTCTGCTAGCTGGT
CTCAAGGGGATACAAAAGTTCTAGTAGTGTATGGACCTAAACCTGTAACGAGGAAGAACGAGAACCCTGAGAAGGCTTGCTTTGAA
GTCATATGGAAGCCTAAATCAGGACAGATTGGAAAAGCCGAAAAGGAGTATGAGATGATACTAAAAAAGACAATACAGAGTATTTG
TGTCTTGACGGTGAATCCAAATACCACCACCTCCGTGATCATTCAGGTTGTACATGATGATGGTTCTCTTCTTCCATGTGCCATAA
ACGCAGCATGTGCAGCTCTTGTAGACGCAGGAATACCTATGAAGCATCTCGCTGTTGCTATATGTTGTTGCCTGGCTGATAGTGGA
TATGTCGTACTCGATCCAAACAAGCTTGAAGAAAAGAAAATGACGGCTTTCGCTTATTTAGTCTTTCCAAATACAACTCTCTCTGT
TCTTCCGGAAGTGGAAGGCGAGCCGGTAGAGCATGGCATCATTACATCAGTCACGCATGGAGTCATGTCAGTGGACGATTACTTCC
TGTGTGTAGAGAACGGTCGTGCTGCTACGGCTAGTTTATCTGCATTTTTTAGGAAGAACTTCCAACAAACCCAAGGAGCTGTTTAG
AAGCATGAATCCATGTCCTTTCCGTTAGAATTTGAACGTTACGGGAACTTAATGGTCAATGTGTTTAATCAAATTTTTTAAAAACA
ACAAAAAATTCGTATGTTTAGTTATGTTAACAGACGACCCTCTTGCCTTTAATACAATTATTATATATATATAAGTTCACTCATCA
TCATGGAGGGGCATACGACAACAATAAGTTCAAGGCGTTGCATTAGTGCTCTGGAGACGTTGAAGCATGAGTTGGTAGAGCGCAAA
GCCACCATGGTGGCAACCTGGCATTCTTGATACCATTGTCTTCAGCTCCTCCAAAGAAACAGTGTGGAGCTGTGTTGACCCAAACC
CATCTTCAGCACTAGAATACAGTTTCGGAATGTCGTCCGAATGATGACTACACTTGATGAAGAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002877464 hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp. lyrata] | 1119 | 6e-120 |
| NP_190207 exosome complex component RRP46 [Arabidopsis thaliana] | 1114 | 2e-119 |
| XP_002324223 predicted protein [Populus trichocarpa] | 946 | 6e-100 |
| XP_002281273 PREDICTED: hypothetical protein [Vitis vinifera] | 929 | 6e-098 |
| CBI20856 unnamed protein product [Vitis vinifera] | 928 | 8e-098 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NQT4 Exosome complex exonuclease RRP46 | 354 | 1e-032 |
| Q9CRA8 Exosome complex exonuclease RRP46 | 346 | 1e-031 |
| Q8VYR2 Nudix hydrolase 9 | 304 | 8e-027 |
| O42872 Exosome complex component ski6 | 135 | 3e-007 |
| Q8ZVM9 Probable exosome complex exonuclease 1 | 131 | 9e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LX74 AT3G46210 protein | 1114 | 1e-119 |
| B9IKJ0 Predicted protein | 946 | 4e-100 |
| B9H8Z6 Predicted protein | 927 | 7e-098 |
| B9RRX9 Exosome complex exonuclease RRP46, putative | 883 | 9e-093 |
| Q2HRD9 Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease | 854 | 2e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G46210.1 3' exoribonuclease family domain 1-containing protein | 1114 | 8e-122 |
| AT3G46210.2 3' exoribonuclease family domain 1-containing protein | 1114 | 8e-122 |
| AT3G46210.3 3' exoribonuclease family domain 1-containing protein | 1114 | 8e-122 |
| AT3G46210.4 3' exoribonuclease family domain 1-containing protein | 1114 | 8e-122 |
| AT3G46210.5 3' exoribonuclease family domain 1-containing protein | 1114 | 8e-122 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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