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Information for unigene UN02320
FASTA Sequence |
Unigene ID: UN02320 | Length: 1177 |
SSR | | AGAGAGAAAATGATAATAACTAACAAAGGAAAATGATTCACAAGTCACACCAAACTAAACTAGATATTGAAAAGCTAACAAAGTGG
GTAGAAAAAGAAAGAAAGAAAAATTCATACACCCATTTCATAATTAACATTAATCATCAATCCACCAACTTAAGCTCTCTCTCATT
AACCACGCAAATAAAGCAACAAATAAAAATAAAAAGCATAACGAATCTTAAGCTTTTTTCTTCACCATTCATCAGTTGGTTGCACT
GCTTCGGAATGAGGCCAACGCCTTAACTGCTGCAGCTCTCAAAATGTATTGATGGTAAGCTGCTGCTGCTAATGCTCCAACGAATG
GCCCAACCCAAAAAATCCAATGGTCATCCCATGCCTTCTCGTTGTTGTAGATAACAGCAGCACCAAAGCTTCTCGCTGGGTTAATT
CCAGTTCCAGTGATGGGGATGGTTGCCAAATGCACCATGAACACAGCAAATCCAATTGGAAGTGGAGCCAAAACGGGGATGTGAGA
GTCACGAGCGCTTCTCTTAGGGTCGGTAGCAGAGAAGACGGTGTAAACGAGGACGAAAGTTCCGATGATCTCAGCTCCGAGGGCAG
TTCCTGTACTGTAACCAGGGGCGACAGTGTTAGCTCCGCCACCGAGAGTGTTGTAAGGAGTCTTCATGAAAGCTTTCACGAAACCC
ACACCACAAATGGCTCCAAGACACTGAGCTATCATGTAACCAACAGCTCTCACCAAAGACACCTTACGTGCCAAGAATAGACCAAA
AGTCACAGCTGGGTTAATGTGACCACCAGAGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATACCACCGAAGGCCCAAGCGA
TACCGAGTAAACCAACGCCGTCACAAGGACCGGTTTGTTTCTTGTGGCCGATGACTGTGGCTATGGTGACGTAGAGGAAGAGGAGG
GTGGCGATGAACTCGGCGATGAGAGCTCTGTAGAAAGACCAAGACTTGAGCTCTCCCATGTCGAGAAGGGGAGCTGGTGGAGGATC
CACGTAGTCTTTTCCATGGCTGTGTGTTGCTTGTCCCTCTTCGCTCACTTCTTTCGACATCTTGTTTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTATAGCTTAGCTATGGAGTTTGTCTGAATTGAGTAGCTGTATGTCC
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GenBank top hits (Blast detail) | Score | e value |
AAG30607 aquaporin [Brassica oleracea] | 1425 | 2e-155 |
NP_195236 aquaporin PIP2-7 [Arabidopsis thaliana] | 1389 | 3e-151 |
AAB65787 plasma membrane intrinsic protein [Arabidopsis thaliana] | 1374 | 1e-149 |
AAB36949 plasma membrane intrinsic protein PIP3 [Arabidopsis thaliana] | 1374 | 1e-149 |
XP_002869108 hypothetical protein ARALYDRAFT_491143 [Arabidopsis lyrata subsp. lyrata] | 1373 | 2e-149 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P93004 Aquaporin PIP2-7 | 1389 | 1e-152 |
Q9ZVX8 Probable aquaporin PIP2-8 | 1333 | 4e-146 |
P42767 Aquaporin PIP-type | 1273 | 3e-139 |
Q7XLR1 Probable aquaporin PIP2-6 | 1202 | 6e-131 |
Q9ATM4 Aquaporin PIP2-7 | 1138 | 1e-123 |
TrEMBL top hits (Blast detail) | Score | e value |
Q9FUC0 Aquaporin | 1425 | 1e-155 |
C0SVL5 Putative uncharacterized protein At4g35100 (Fragment) | 1389 | 2e-151 |
Q5DVT5 Plasma membrane intrinsic protein 2;5 | 1320 | 2e-143 |
A9PG56 Aquaporin, MIP family, PIP subfamily | 1317 | 4e-143 |
B2M0U5 Aquaporin | 1314 | 9e-143 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT4G35100.1 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel | 1390 | 8e-154 |
AT2G16850.1 PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channel | 1334 | 2e-147 |
AT3G53420.1 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel | 1125 | 4e-123 |
AT3G53420.2 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A); water channel | 1125 | 4e-123 |
AT5G60660.1 PIP2;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;4); water channel | 1117 | 4e-122 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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