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Information for unigene UN02339
| FASTA Sequence |
| Unigene ID: UN02339 | Length: 1236 |
SSR | | GGGAGGACCAAAGAAGAAGAAGAAGGCCAATCATGTCTAGGCAAGTCGCGGCAAGGCTTCTCGGATCTCTGTCTCGCCGTTGCTCA
ATCAGCAGCAGCAGCAGCTCTGAAGTGTTTCCGACTCTCACCTCATTGACCCAGTCCCTCTCATTCGCGTCTGATCCTCCGCCTCC
AGCTGCCGTCTTCGTTGACAAAAACACCAGAGTCATGTGTCAAGGCATCACCGGAAAGAACGGAACTTTCCACACCGAGCAAGCCA
TTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCAAAGAAGGGTGGAACAGAGCACTTAGGTCTCCCTGTTTTCAACTCTGTT
GCTGAAGCCAAGGCTGAGACCAAAGCCAATGCCTCTGTCATTTATGTACCCGCGCCTTTCGCTGCTGCTGCTATTATGGAGGGTAT
ACAAGCTGAGTTGGATCTTATCGTCTGCATTACTGAAGGAATCCCTCAACATGACATGGTACGTGTAAAGCATGCACTCAACAGTC
AATCAAAAACTAGGCTGATTGGTCCAAACTGCCCTGGTATTATCAAGCCTGGTGAATGCAAGATTGGTATTATGCCGGGGTACATC
CACAAGCCTGGCAAGATTGGGATTGTTTCTCGTTCTGGAACCTTGACTTATGAAGCTGTTTTCCAAACAACTGCAGTTGGTCTAGG
ACAATCTACTTGTGTAGGAATTGGTGGAGATCTTTTAATGGGACCAACTTTGTCGACTGCTTGGAGAAATTTTTTGTTGATCCTCA
AACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCAGCTTTGATAAAAGAAAGTGGTACTGATA
AGCCTGTTGTTGCTTTCATTGCCGGACTCACTGCACCACCGGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCCGGTGGCAAA
GGTACAGCTCAGGACAAGATTAAGAGCCTAAATGATGCAGGTGTGAAGGTTGTTGAATCTCCAGCTAAGATAGGAGCGGCCATGTA
TGATCTCTTCAAAGAAAGAGGTCTTTTGAAGCAGTGAAGTGAATTTCACTTGCTCACTTTTTTTTTCCATCTTGAAACCTTTCAAG
AAGTAAACAAAAAAAAGAAACGTAAGCCCTCGCCATTGATGGGTTGCACACCATTTTAGGGTTGTTTTTCTAAATCTATTTTGTTT
TTGCAATTAAAGAGTGATAAATCAAAAGATTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_196447 Succinyl-CoA ligase [GDP-forming] subunit alpha-1 [Arabidopsis thaliana] | 1068 | 5e-114 |
| XP_002871316 hypothetical protein ARALYDRAFT_487662 [Arabidopsis lyrata subsp. lyrata] | 1068 | 5e-114 |
| XP_002872045 hypothetical protein ARALYDRAFT_489184 [Arabidopsis lyrata subsp. lyrata] | 1008 | 4e-107 |
| NP_197716 Succinyl-CoA ligase [GDP-forming] subunit alpha-2 [Arabidopsis thaliana] | 1002 | 2e-106 |
| AAM65450 succinyl-CoA synthetase, alpha subunit [Arabidopsis thaliana] | 1002 | 2e-106 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P68209 Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial | 1068 | 2e-115 |
| Q8LAD2 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial | 1002 | 9e-108 |
| Q6ZL94 Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 891 | 7e-095 |
| P13086 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 748 | 3e-078 |
| P36967 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial | 747 | 3e-078 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H632 Uncharacterized protein At5g23250.2 | 1002 | 2e-106 |
| A9PFB5 Putative uncharacterized protein | 935 | 9e-099 |
| A9PDB9 Putative uncharacterized protein | 928 | 6e-098 |
| B9N355 Predicted protein | 923 | 2e-097 |
| B9RL91 Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial, putative | 921 | 4e-097 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G08300.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1068 | 2e-116 |
| AT5G23250.1 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1002 | 8e-109 |
| AT5G23250.2 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative | 1002 | 8e-109 |
| AT5G49460.1 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase | 140 | 7e-009 |
| AT3G06650.1 ACLB-1; ATP citrate synthase | 138 | 1e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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