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Information for unigene UN02378
| FASTA Sequence |
| Unigene ID: UN02378 | Length: 1426 |
| SNP | CTGCAACATCATCTATTAAAAAAGGGAGAGAATATTTGATTTTTACAAAGATGTTAGATATGGTTGTACAGCTTGATCTCAAAATC
AGACTCCTTAAACAAAGTTACATTACAACTAATCTTTGCAAACATTGTCTTTACCATCTCAGCCAAATGACTTGCTTCTTGTATAT
GTTTTATACTCTCAATACAGAGCTTCCCTTGGTGCTCCGATTAAGTTAAGCGCAGTTGCTGCTATATGAGACGGCATGAGTCCAGC
TTCAGCCATTTGATCAGCTGGTGAACCGTGGTCAATGTACCTATCAGGCAATACCATTGGTCTCCACTTGAGCTTCCCATCGAGAA
GACCATCCAATGCAAGAAACTGAACCACATGCGATCCAAACCCTCCAATAGAACCTTCTTCAACCGTGATCAGCACCTCGTGAGAC
TTAGCTAAGCTGCGAATGAGAGCACGGTCCAACGGCTTACAGAACCGTGCATCTGCTACGGTTACGTTCAATCCACGTTCTTGGAG
CATCACAGCCGCTCCTAAACAGCTCTGAACCGCTGAGCCATACCCCAGCAAAGCAACCCTCTCTCCTTCTTTTAAGATCCTACCTT
TCCCAACCTCAATAGGAACACCTTTGTTTCCTGGAGGTAACGCAACGCCAATACCGTTACCTCTAGGGTAACGGAAACAAGAAGGA
CGGTCATCGATAGCAGCAGCGGTTGCAACAATGTTAAACAGCTCTGCTTCATCCGATGGAGCCATCACTATCATGTTAGGAAGACA
AGCCATAAACGTAACATCAAACGCTCCACAATGTGTTGGACCATCAGCTCCCACTAGTCCAGCTCTATCCATCGCAAATCTCACCG
GTAACTTCTGCAAATCCACATCATGTACAACCTGGTCATAAGCACGCTGCATGAAAGAGGAATAGATTGCACAGAAGGGCTTGAGT
CCCTCACATGCTAAGCCAGCAGCAAAAGTAGCTGCATGCTGTTCCGCTATTCCCACATCGAAACATCTAGTTGGGAAGCGACGTTG
GAAGAGATTCAACCCTGTCCCACCTCCCATGGCTGCATGAATAGCAACCACGTCTTTGTCTACCTCTGCTTCCGCCACTAATGCCT
CCGCAAAGTACGTTGTGTAAGACTGAGTCTTGTTAGTAGTTTTGAACTGTTTACTCGTAGCAGGATCAAACTTCACAACACCATGG
TATTTGTCATCAGCTCTCTCTGCGTAAGGATAACCACGACCTTTCTCTGTTATGACATGAATAAGCACTGGTCCTGTGGTTCTTGC
ACTCTTAACTTCTTTAAGAATGGCTACCAAATCATCTATGTTGTGTCCATCGACTGGTCCAATATAGTAGAGTCCGAGTTCTTCAA
ATAATGTTGATCCAGTTCCGCTTATCATCCCTCTAGCGTATTCATCTACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABE60813 CLA1-like protein [Brassica rapa] | 2133 | 2e-237 |
| XP_002870230 hypothetical protein ARALYDRAFT_493326 [Arabidopsis lyrata subsp. lyrata] | 2100 | 1e-233 |
| NP_193291 Deoxyxylulose-5-phosphate synthase [Arabidopsis thaliana] | 2098 | 2e-233 |
| AAL16232 AT4g15560/dl3821w [Arabidopsis thaliana] | 2098 | 2e-233 |
| CAA74713 transketolase [Arabidopsis thaliana] | 2087 | 4e-232 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q38854 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic | 2098 | 9e-235 |
| O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic | 1955 | 4e-218 |
| O22567 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic | 1865 | 1e-207 |
| B6IRB5 1-deoxy-D-xylulose-5-phosphate synthase | 1274 | 3e-139 |
| Q2W367 1-deoxy-D-xylulose-5-phosphate synthase | 1273 | 4e-139 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q1PCC5 CLA1-like protein | 2133 | 1e-237 |
| Q944G7 AT4g15560/dl3821w | 2098 | 1e-233 |
| Q94CE7 Putative DEF (CLA1) protein (Fragment) | 2061 | 3e-229 |
| C7U110 1-deoxy-D-xylulose 5-phosphate synthase 1 | 1953 | 1e-216 |
| Q9XH50 1-D-deoxyxylulose 5-phosphate synthase | 1953 | 1e-216 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G15560.1 CLA1 (CLOROPLASTOS ALTERADOS 1); 1-deoxy-D-xylulose-5-phosphate synthase | 2099 | 6e-236 |
| AT3G21500.2 1-deoxy-D-xylulose-5-phosphate synthase | 1655 | 2e-184 |
| AT3G21500.1 1-deoxy-D-xylulose-5-phosphate synthase | 1637 | 2e-182 |
| AT5G11380.1 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate synthase | 1027 | 1e-111 |
| AT5G11380.2 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate synthase | 544 | 1e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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