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Information for unigene UN02460
| FASTA Sequence |
| Unigene ID: UN02460 | Length: 1346 |
SSR | | GGGTGTGGAGGCGTTGAACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGACTTGCTTGATGAAGCTCTTTTAAGGCCGGGAA
GATTGGAGGTTCAAGTTGAGATAAGCCTTCCTGATGAAGCTGGGCGTTTCCAAATTCTTCAGATTCACACAAACAAGATGAAGGAA
AATTCTTTCCTTGGTCATGATATCAATCTCCAAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCGGAGCTTGAAGGAGTGGT
TAAAAGTGCTACCTCATATGCGTTAAACGGACAATTAAGCATGGATGATCTTACAAAGCCAGTGGAAGAAGAGAATATCAAGATCA
CTATGGAGGACTTTCTCCATGCAATCCATGAAGTTCAGCCTGCCTTTGGAGCCTCCACAGATGACCTGGAGCGCTGCAGACTTAAT
GGGATGGTGGATTCTGGTGATCGGCATAACCACATTTACAAAAGAGCGATGCTTCTAGTCGAGCAAGTTAAAGTTAGTAGTAGAAG
TCCTCTTGTCACCTGTCTTCTAGAGGGGCCAAGTGGAAGTGGAAAAACTGCTTTAGCCGCAACTGTTGGTATCGATAGTGACTTCC
CCTATGTTAAGATCGTCTCTGCTGAAACTATGATTGGTCTTCAGGAGAGCACCAAATGTGCTCACATTGTCAAGGTCTTTGAGGAT
GCATATAAATCACCAATGAGCATCATTATCCTTGATGATATGAAAGATTGTTGGAGTACGTAGCAATCGGTCCTCGTTTCTCAAAC
ATTATTTCTCAGACGTTGATGGTTCTTCTCAAACGACTTCCTCCGAAGGGGAAGAAACTTCTCGTGTTTGGGACAACAAGTCAACT
AACCTTCTTAGACTCTGTTGGTATCTGTGATGCCTTCTCTATCACTTACTCTGTTCCAACATTGAGAACAGAGGATGCAAAGAAGG
TGCTGAAGCAGCTTAATGTCTTCTCGGAGGATGATATCGATGCAGCTGCCGAGGCTCTCAATGATATGCCGATCAAGAAGCTGTAC
ATGCTAATTGAGATGGCGGCGCAAGGCGAAGACGGTGGATCCGCAGAAGCTATTTATGCTGGGAGAGAGAAAATCAAGATCACTCA
TTTTTTCGATTGCCTACAAGACGTTGTCCGATTCTAAAAACTTCCCAGGCAAATCATATTTTCTTCTTATAAAGCTTTTGAAACAA
TTGGTTTGGTATTTTAAATCTTTGGATTTTATTTTATTTTATTTTATTTTATTTGGTGGATGAATGGAACTGAGAGGGCTTTCTTG
TGCCTGCATTCTTCTTTTGGTGAATGAGACAATATTGCTTTTGGATTTTTAGTTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874819 N-ethylmaleimide sensitive factor [Arabidopsis lyrata subsp. lyrata] | 1184 | 2e-127 |
| CAB81033 putative component of vesicle-mediated transport [Arabidopsis thaliana] | 1171 | 6e-126 |
| NP_192400 vesicle-fusing ATPase [Arabidopsis thaliana] | 1171 | 6e-126 |
| AAD17345 similar to N-ethylmaleimide sensitive fusion proteins; contains similarity to ATPases (Pfam: PF00004, Score=307.7, E=1.4e-88n N=1) [Arabidopsis thaliana] | 1171 | 6e-126 |
| XP_002329781 predicted protein [Populus trichocarpa] | 1105 | 3e-118 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M0Y8 Vesicle-fusing ATPase | 1171 | 3e-127 |
| Q9P7Q4 Vesicular-fusion protein sec18 | 663 | 2e-068 |
| P18759 Vesicular-fusion protein SEC18 | 651 | 5e-067 |
| Q75JI3 Vesicle-fusing ATPase | 626 | 4e-064 |
| P54351 Vesicle-fusing ATPase 2 | 614 | 1e-062 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9N3G0 Predicted protein | 1105 | 2e-118 |
| B9H2U6 Predicted protein | 1103 | 3e-118 |
| Q40495 N-ethylmaleimide sensitive fusion protein | 1060 | 3e-113 |
| A5C0W8 Putative uncharacterized protein | 1056 | 9e-113 |
| B9RZA0 Vesicular-fusion protein nsf, putative | 1053 | 2e-112 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G04910.1 NSF (N-ethylmaleimide sensitive factor); ATP binding / binding / nucleoside-triphosphatase/ nucleotide binding | 1171 | 2e-128 |
| AT3G09840.1 CDC48 (CELL DIVISION CYCLE 48); ATPase/ identical protein binding | 190 | 1e-014 |
| AT1G50250.1 FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | 189 | 2e-014 |
| AT5G42270.1 VAR1 (VARIEGATED 1); ATP-dependent peptidase/ ATPase/ metallopeptidase | 188 | 2e-014 |
| AT5G19990.1 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase | 185 | 5e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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