 |
Information for unigene UN02468
| FASTA Sequence |
| Unigene ID: UN02468 | Length: 1382 |
SSR | | GCAAACACGGATTGCTGAGCGTCACTTCCGGCGCCAATCCCGTCTCCCTCAAGCGAGGAATCGATAAAACCGTTCAAGGTTTGATC
GAAGAGCTCGAGAAGAGAGCTAGACCAGTCAAAGGCGGTAGCGACATCAGAGCCGTGGCCACAATCTCAGCTGGAAACGATGAGCT
TGTCGAAGCGATGATCGCTGACGCCATCGACAAAGTCGGACCTGATGGTGTTCTCTCCATCGAGTCTTCGTCCTCTTTTGAAACCA
CCGTTGAAGTCGAAGAAGGGATGGAGATTGACAGAGGCTACATCTCTCCTCAGTTCGTTACAAACCCTGAGAAGCTACTGGTTGAG
TTCGAGAACGCGAGAGTGTTGATCACTGATCAGAAGATCACTGCCATCAAAGACATCATCCCAATCTTGGAGAAGACCACTCAGCT
TCGTGCTCCGCTGCTGATCATCGCTGAGGATGTTACAGGCGAGGCTTTAGCAACTCTCGTCGTGAACAAACTCCGTGGTGTTCTCA
ACGTTGTCGCCGTCAAGGCTCCAGGGTTTGGAGAAAGGAGGAAAGCTATGCTTCAAGATATCGCAATCTTGACGGGAGCTGAGTAC
CAAGCACTTGACATGGGCCTGCTGGTGGAGAACACAACCATAGATCAGTTGGGTATCGCTCGTAAAGTGACCATAAGCAAAGACTC
GACCACGCTTATAGCAGATGCGGCTTCCAAGGACGAGTTGCAAGCTCGTATCTCTCAGCTGAAGAAGGAACTGTTCGAGACTGACT
CTGTGTACGACTCGGAGAAGCTCGCTGAGAGAGTAGCCAAACTCTCTGGTGGTGTTGCCGTCATTAAAGTCGGAGCAGCGACTGAA
ACCGAGCTCGAGGACCGTAAGCTTCGTATCGAGGACGCGAAGAACGCGACGTTTGCTGCTATCGAGGAAGGGATAGTCCCCGGTGG
TGGTGCGACTCTGGTGCATCTCTCCACTGTTATCCCTGCCATTAAGGAGACGTTTGAGGACGCTGATGAACGTCTGGGAGCTGATA
TAGTACAGAAGGCATTGGTGGCACCAGCAGCGCTTATTGCGCGGAACGCTGGGATTGAAGGAGAAGTTGTGGTGGAGAAGATTATG
TTCAGTGAATGGGAGCTAGGGTACAACGCCATGACTGATACCTATGGGAATCTGTTGGAAGCTGGAGTGATTGATCCGGCTAAAGT
GACGAGATGTGCGCTTCAGAACGCTGCTTCGGTTGCACGGATGGTGCTGACCACTCAGCTATCGTTGTTGACAAGCCTAACCTAAG
CTGCTGCTGCTGCTGCACCTGAGGCCTCATGGTGTATGAAGTTGCACATGTGTATCTCTGTTCCCATCTATCGATCTGCAATGTTT
TAAGTT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| P21239 RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor | 1980 | 1e-219 |
| NP_180367 chaperonin-60alpha [Arabidopsis thaliana] | 1939 | 6e-215 |
| XP_002880957 CPN60A [Arabidopsis lyrata subsp. lyrata] | 1937 | 1e-214 |
| AAM63618 putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] | 1932 | 4e-214 |
| XP_002328161 predicted protein [Populus trichocarpa] | 1847 | 3e-204 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1980 | 4e-221 |
| P21238 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1939 | 2e-216 |
| P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic | 1834 | 4e-204 |
| P08824 RuBisCO large subunit-binding protein subunit alpha (Fragment) | 1791 | 4e-199 |
| P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) | 1764 | 5e-196 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L5U4 Putative rubisco subunit binding-protein alpha subunit | 1932 | 3e-214 |
| B9MZ75 Predicted protein | 1847 | 2e-204 |
| B9HQD5 Predicted protein | 1836 | 3e-203 |
| Q2PEP1 Putative rubisco subunit binding-protein alpha subunit | 1825 | 6e-202 |
| Q2PEQ0 Putative rubisco subunit binding-protein alpha subunit | 1820 | 2e-201 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G28000.1 CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding | 1939 | 2e-217 |
| AT5G18820.1 EMB3007 (embryo defective 3007); ATP binding / protein binding | 1284 | 2e-141 |
| AT1G55490.1 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1041 | 3e-113 |
| AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding | 1041 | 3e-113 |
| AT5G56500.2 ATP binding / protein binding | 1032 | 3e-112 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
