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Information for unigene UN02470
| FASTA Sequence |
| Unigene ID: UN02470 | Length: 1357 |
SSR | | GCATTGGTTCTCCATCTTTAACTCGTTCATGATGGTTATTTTTCTCACTGGTCTGGTCTCGATGATATTGATGAGAACTCTCAGAA
ATGATTACGCGAAGTATGCTCGTGAAGATGATGATCTCGAGAGCTTGGAACGGGATGTAAATGAAGAATCTGGCTGGAAACTTGTG
CATGGGGATGTGTTCAGACCACCATTTGGTTTAGTTCTTCTCTCAGCTGTTGTCGGCACAGGTGCACAGCTGGCGTTGCTTATTCT
TCTTGTCATATTAATGGCCATCGTTGGGACTCTATATGTTGGGAGAGGAGCAATTGTCACAACTTTCATAATTTGCTATGCTCTGA
CTTCTTTTGTCTCTGGTTACGTGAGTGGTGGAATGTACTCAAGAAGCGGCGGTAAGCACTGGATCAAGTGCATGGTCCTCACGGCT
TCTCTCTTCCCCTTTTTGTGCTTTGGGATCGGCTTTATCCTAAACACAATTGCCATATTCTATGGATCCCTTGCGGCTATTCCTTT
CGGGACATTGGTGGTTGTGTTTGTAATTTGGGGTTTCATTTCCTTCCCCTTAGCCCTCCTCGGGACAGTCGTTGGGAGAAATTGGA
GTGGTGCTCCAAACAATCCATGCCGTGTGAAGACTATTCCACGTCCAATACCTGAGAAAAAATGGTACTTGACTCCATCTGTTGTC
TCCCTGATGGGAGGTTTGCTACCATTTGGAAGCATCTTTATTGAGATGTACTTCGTCTTCACATCCTTCTGGAATTACAAGGTGTA
CTACGTGTATGGATTCATGCTGCTGGTATTTGTGATTCTGGTCATAGTGACGGTCTGTGTGACAATAGTGGGAACTTACTTCCTGC
TGAACGCAGAGAACTATCACTGGCAGTGGACTTCGTTTTTTTCTGCTGCATCAACGGCGGTCTATGTCTACCTATACTCCATCTAT
TACTACTACGTGAAGACGAAGATGTCAGGATTCTTCCAGACAAGCTTTTACTTTGGGTACACCATGATGTTCTGTCTTGGACTCGG
AATCCTTTGCGGAGCTGTTGGATTCTTGGGATCAAACCTGTTTGTGAGGAGAATCTACAGAAACATCAAATGCGACTAGAGGAATT
ATCAATAAAGAGGAAAAGAACATCCAGTTATGATGGACATACATCTCTATATATAAGCAGTAGAGAGGGAGAATATATACATGTAT
CATCCTTCAATGGGGGCTTTTTGTCAGTCTTATTTTATTCCCAATTTGGTAAGTGAACTGTTTTATTTCTCTTTAGATTAGAATTT
GAGTGGGTGTAACTACTACTACTACTACCTGTAATTTTTTCCCCCTGTTCCTTATGACTTCACTCCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAB65482 endomembrane protein EMP70 precusor isolog; 68664-64364 [Arabidopsis thaliana] | 1914 | 4e-212 |
| NP_563881 transmembrane nine 1 [Arabidopsis thaliana] | 1914 | 4e-212 |
| AAL07091 putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] | 1914 | 4e-212 |
| XP_002889842 hypothetical protein ARALYDRAFT_471233 [Arabidopsis lyrata subsp. lyrata] | 1914 | 4e-212 |
| XP_002530674 endomembrane protein emp70, putative [Ricinus communis] | 1870 | 6e-207 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9HD45 Transmembrane 9 superfamily member 3 | 1253 | 8e-137 |
| Q9ET30 Transmembrane 9 superfamily member 3 | 1253 | 8e-137 |
| Q54ZW0 Putative phagocytic receptor 1b | 844 | 2e-089 |
| A5D7E2 Transmembrane 9 superfamily member 4 | 804 | 1e-084 |
| Q92544 Transmembrane 9 superfamily member 4 | 804 | 1e-084 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O04091 Endomembrane protein EMP70 precusor isolog; 68664-64364 | 1914 | 3e-212 |
| Q93ZV4 Putative endomembrane protein EMP70 precusor isolog (Fragment) | 1914 | 3e-212 |
| Q940G0 At1g10950/T19D16_13 | 1914 | 3e-212 |
| B9SXF5 Endomembrane protein emp70, putative | 1870 | 4e-207 |
| B9GZ61 Predicted protein | 1837 | 3e-203 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G10950.1 endomembrane protein 70, putative | 1915 | 1e-214 |
| AT5G37310.1 LOCATED IN: integral to membrane, Golgi apparatus, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT1G14670.1); Has 1019 Blast hits to 986 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). | 909 | 6e-098 |
| AT1G14670.1 endomembrane protein 70, putative | 899 | 8e-097 |
| AT2G01970.1 endomembrane protein 70, putative | 887 | 2e-095 |
| AT3G13772.1 endomembrane protein 70, putative | 782 | 3e-083 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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