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Information for unigene UN02550

FASTA Sequence
Unigene ID: UN02550Length: 1273 SSR 
CAGCAAGAAACCTTATAGCTTATTCAGTTGGAGATATTAAGTGCCCGGAAGACAAAGAAAGAAAAAAAAAGAAAGATTTTACAAAT
CTTACAATGTCATGAGAGTTTCCACATGATTGGAATAAGCAGAGGCGATCGGGAGAGGTTTGTCCCCCAAACCATTCTGGCGCCTG
AATTGTTCATCCGCAACTCCATCAACAACGCTTCTTCTGAAGCTGTTTCCCTTTGGATCAAAATATATAATATGGAATGGATTCGC
CAAAGCTAATGGTACATACATAAACTCACCAGCACCATTAACACCTCTAAAGGTAAACCGGGTTTTGGATACTGGATCATGGCGAG
GAAAAGGTAAACAAACGTGTCTATGGGACCACTCGTGTTTCTCTGCATGCTCTAGGGTCCACATATTAAGATCATCCCCTAAGGAA
ACAACACAAGTTAACTTTCCCCAACAATGAACAAGGGAACGAAAACCAGAAGTCAGATTCCATGGTACTTTAATCATACTCAACTT
TTCAGATCTGACATGGAAGCATGCCAGAGACTGATTAGTATAATGTTCAGGGGTAGTGGGAGCGGCCAAATAATACAGAACCCCAT
TAACACATAGGGCTCCAAAGGGGAAAAGGGCATGTTCAGGGACACCTTCGATGACTCTCCATCGACCAGCTCCGTCTCCTCCCAGT
GTAAGAGCCCGAGGCTTACGAGGACGATGACGTCCATCACAAGGCAAAGACAGTACTTTGTACGTAGACAACCGGGTCGTATCCTA
AAAAGCTCACCGAGCCGTCTTTCCAGCTACGTGCAGGAATGGGTAACGTTGAGAAGCGCCTCGTAGTTGGGTTCCAAATTTGAGGG
TGTCCTAATTTCTCAACGCAGATCAAGCCATGGACTGACTCGCTACTAAAAAAGCAATACCTATCTGGACGAGGCATTGAATAATT
TCTGTCAACCACAGCGACAGGGTTGTTGTTGTTGTTGTTCGAATTGTGTTCTTGTTGTTGTGGTAAGGAGAAAACGAACATCTTGC
TTTCCACTTCTAACAAGATGAGAAGACAGGGAGTTTGATAGGATCTAGCTGCGAGGGACCTAATAAAATCTGGCACGGTTGTTATG
GAAGACAAGAGCTTCGACACGCACCGAGACTGCACTATAGATTTCGAAGGCAGTCGTAAAAGTACCTCCCAGATTAGATCCACATG
TAACGAAGCTCCTTTTGATCTTTTTGATCCTCTCTTCATCTCTAGATCTTGTTGCTCCCCCATCTTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002879631 hypothetical protein ARALYDRAFT_902818 [Arabidopsis lyrata subsp. lyrata]3912e-035
XP_002891409 hypothetical protein ARALYDRAFT_336931 [Arabidopsis lyrata subsp. lyrata]3562e-031
NP_175204 putative F-box protein [Arabidopsis thaliana]3347e-029
XP_002887926 hypothetical protein ARALYDRAFT_315031 [Arabidopsis lyrata subsp. lyrata]3347e-029
XP_002884567 predicted protein [Arabidopsis lyrata subsp. lyrata]3283e-028

Swiss-Prot top hits (Blast detail)Scoree value
Q9SXA0 Putative F-box protein At1g477303343e-030
Q9C6J3 Putative F-box protein At1g508703219e-029
Q9FZF8 Putative F-box protein At1g477903031e-026
Q9LNF6 F-box protein At1g480602814e-024
Q9SS35 Putative F-box protein At3g102402789e-024

TrEMBL top hits (Blast detail)Scoree value
Q9M8J0 F28L1.22 protein2638e-021
Q9LQ44 T30E16.291472e-007
B9HMA7 Predicted protein1428e-007

Arabidopsis top hits (Blast detail)Scoree value
AT1G47730.1 F-box family protein3352e-031
AT1G50870.1 F-box family protein3218e-030
AT1G47790.1 F-box family protein3031e-027
AT3G10240.1 F-box protein-related2788e-025
AT3G06280.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, seed, leaf; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47730.1); Has 223 Blast hits to 219 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2643e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information