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Information for unigene UN02596
FASTA Sequence |
Unigene ID: UN02596 | Length: 796 |
SSR | | TTTTTTCTTTGGCTCAAAGATACCTTTCTTCTCTGTGTGTGTGCACATTGATAATGTACCTTTTTTTTTAACAATCTGTTAGCATC
TACTGTAAAAACACACAAGTGGAGAATAAACGCATCCCTCTCACTCTCTGTCTTTCTATTTGGCTTCTTGCTCCATCAAGGGAATC
TTCTTCCACGTGTCATCCACACCATCTAACTGGAGCGGCGGGAGCGAGAAGACACTCACCGTAGAGCTTTTACTCCTGATCTCTTG
CAAAACACGCAAGGCAGCGATTGTACTTTTCATGTGGAGGCTCTCCACCAACTTGTGCTCTGCTTGGGCGTTGTTGGCAGAAGAAG
AAGAAGAAGACTCTGTTCCATCGGGGAAGTAGCGGTCGAGCATTGCCTCGGATTCTTTGATGAGCTTGTACAGCAAGTCTGTAGTG
TAAAAAGGTTGCCGAAGAACTTTCTGGATGTAAGGCAAACGCATGAGATCACCGGTTCGCTTGTCGTACTTCTTCAGTATCTTAAC
CAATCCTGTGTAGTTGAGAGCACTGTAGTTCTCGAGGAGAACCATCTCTCCGTGGAGATCAACAATCTCTTTCCTTATGCTCATCA
TCTTCTCCTTTGCTTTGATAATCCTATCTCTCAATTCCTTTAATCGGATGATATACTCTTCCTCCTTCTCGACGAAGAAATTATTG
AATTTCTCCAACTCGTCCTCTAGCAACTGGACGAAACTCATCTCTTCTTTCGACATTTCGTCGCCGGAGGAAGCCAAGGAGGAGGA
GTCTAGTCGGAGACGTTTGGCC
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GenBank top hits (Blast detail) | Score | e value |
XP_002871925 SPX domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 814 | 7e-085 |
NP_197515 SPX domain-containing protein 1 [Arabidopsis thaliana] | 813 | 9e-085 |
AAM64762 ids4-like protein [Arabidopsis thaliana] | 812 | 1e-084 |
XP_002285203 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 713 | 3e-073 |
CBI28201 unnamed protein product [Vitis vinifera] | 711 | 6e-073 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q55B06 SPX and EXS domain-containing protein 1 | 150 | 3e-009 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8RY68 AT5g20150/F5O24_40 | 813 | 6e-085 |
Q8LBH4 Ids4-like protein | 812 | 8e-085 |
B7FKF7 Putative uncharacterized protein | 536 | 8e-053 |
B9HAK6 Predicted protein | 532 | 2e-052 |
B9SES9 Xenotropic and polytropic murine leukemia virus receptor ids-4, putative | 532 | 2e-052 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G20150.1 SPX1 (SPX DOMAIN GENE 1) | 819 | 8e-088 |
AT2G26660.1 SPX2 (SPX DOMAIN GENE 2) | 503 | 3e-051 |
AT5G15330.1 SPX4 (SPX DOMAIN GENE 4) | 412 | 1e-040 |
AT2G45130.1 SPX3 (SPX DOMAIN GENE 3) | 324 | 2e-030 |
AT1G14040.1 LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 732 Blast hits to 696 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 246; Plants - 151; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 118 | 1e-006 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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