RadishBase

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Information for unigene UN02644

FASTA Sequence

Unigene ID: UN02644	Length: 1128	SSR
GGAATTTCACAAATTCAGGGCCAAAGTCAAATACTTTTCTCTCACTCTCTCTCTCTCTTCTTCTTCTGTTGAAGAAGAAGCTGTTC TGTAAGAAAGATTATGGACGGAGGTGGCGCGTACAACCCACGCACGGTGGAGGAGGTTTTCAGAGATTTCAAGGGACGTAGGAGTG GCATGATTAAAGCTTTAACCACTGATGTTCAGGAGTTTTACCGACTTTGTGATCCCGAAAAGGAGAACCTGTGCCTTTATGGGCAA CCAAATGAGCGCTGGGAAGTGAATCTACCAGCTGAAGAGGTTCCCCCGGAGCTCCCAGAGCCTGTCTTGGGCATCAACTTTGCCCG GGACGGGATGCAGGAAAAGGACTGGCTGTCCCTTGTTGCTGTCCACAGCGATGCATGGCTTCTTGCTGTTGCTTTCTTTTTCGGAG CCAGGTTTGGATTTGACAAAGCTGATAGGAAAAGGCTTTTCAATATGATGAATGACCTCCCTTCAATATTTGAGGTTGTGGCTGGC ACTGCTAAGAAACAATCAAAGGAGAAGTCTTCTGTTTCCAACAATAGCAGCAACAGATCCAAATCAAACTCAAAGCGAGGATCAGA ACCGAGGCCCAAGCTCACAAAGCCTGAGGAGCCTGAAGATGAAGAGGAGGAAGAGGAAGGTGTGGAAGAAGAGGAGGATGAGGATG ATGAGCAAAGGGGAAACACAGTGTGGGGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATCTGCTGTGATCTCTGTGAGAA CTGGTTCCATGGGAAGTGTGTGAAGATAACACCAGCCAGAGCCGAGCACATCAAGCAGTATAAGTGCCCATCTTGCAGCAACAAGA GAGCTCGGTCCTAAAAATTCAATTCTGTGTATTTGCTTTGCATATGATGATGTAACATGCCTTACTCTTTGGTTAGATCAGATTTG TTGGTTTAAGTCAAGACTTCGAGTGAGAGTTGGTTATCTTAGGCGCAAGTTATTAGCCTCTTCTTTTCTCCATTCTTAGGAAAGAC AATTTAGTTATCATTTGTTACAAATGTTTGTTGAGGGAAGCATCTATGTGTTTAGTGTTTGATCCCTGTTCTGTCTTATTTTTCTG TTAGAGAAGA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197993 alfin-like 4 protein [Arabidopsis thaliana]	930	4e-098
BAE98515 nucleic acid binding protein - like [Arabidopsis thaliana]	923	3e-097
XP_002874304 hypothetical protein ARALYDRAFT_910695 [Arabidopsis lyrata subsp. lyrata]	922	4e-097
ADL36568 ALF domain class transcription factor [Malus x domestica]	871	3e-091
XP_002280895 PREDICTED: hypothetical protein [Vitis vinifera]	864	2e-090

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	930	2e-099
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	156	1e-009
Q9W352 PHD finger and CXXC domain-containing protein CG17446	134	4e-007
Q5RHD1 Lysine-specific demethylase 7A	127	2e-006
Q6ZMT4 Lysine-specific demethylase 7	123	7e-006

TrEMBL top hits (Blast detail)	Score	e value
Q2HIV6 At5g26210	930	3e-098
Q0WWI3 Nucleic acid binding protein-like	923	2e-097
B9RQU2 DNA binding protein, putative	858	7e-090
B9IKC9 Predicted protein	845	2e-088
B9HD31 Predicted protein	842	5e-088

Arabidopsis top hits (Blast detail)	Score	e value
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	930	2e-100
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	752	7e-080
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	720	4e-076
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	688	2e-072
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	685	4e-072

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	4			80%


8	1			20%

Unigene Members	Member information