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Information for unigene UN02685

FASTA Sequence
Unigene ID: UN02685Length: 706 SSR 
GGACCATTATTCCGGCGAGAGAGAGAGAGCAAAAAAAAAATGGACAACTCAGCACCGGACTCTCTACCTAGATCCGAAACCGCCGT
CACCTACGAATCTCCCTACCCTCTCTACGCCATGTCCTTCTCCTCCTCCTCCTCCTCCACCACAACCCACCGAATCGCCGTCGGAA
GCTTCCTCGAGGACTACAACAACCGCATCGACATCCTCTCCTTCGATCCCGACTCCATGTCCGTCAAACCCCTCCCTTCCCTCTCC
TTCGACCACCCCTACCCTCCCACCAAGCTCATGTTCATCCCTCCCTCCCTCCGCCGCGACCTCCTCGCCTCCTCCGGCGACTTCCT
CCGCCTCTGGGAGATCACCGACTCCTCCTCAACCACCGAGCCCCTCTCGGTCCTCAACAACAGCAAGACGTCCGAGTTCTGCGCCC
CGCTGACCTCCTTCGACTGGAACGACGTCGAGCCGAAACGCCTCGGCACGTGCAGCATCGACACCACGTGCACCATCTGGGACGTG
GAGCGGTCCGTGGTCGAGACGCAGCTCATCGCGCACGACAAGGAGGTCCACGACATCGCCTGGGGGGAAGCCAGGGTCTTCGCCTC
CGTCTCCGCCGACGGATCCGTGCGTATCTTCGATCTCCGCGACAAGGAGCACTCCACCATCATCTACGAGAGCCCCCAGCCCGACA
CGCCTCTCCTGAGCTCGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ABP04011 transparent testa glabra 1 isoform 1 [Brassica napus]10431e-111
ABP04014 transparent testa glabra 1 isoform 2 [Brassica napus]10431e-111
ADP38078 WD40 transcription regulator [Brassica oleracea var. botrytis]10431e-111
ADK11704 transparent testa glabra 1 [Brassica rapa subsp. rapa]10403e-111
ABY59776 WD-repeat regulatory factor [Brassica napus]10394e-111

Swiss-Prot top hits (Blast detail)Scoree value
Q9XGN1 Protein TRANSPARENT TESTA GLABRA 110356e-112
Q9LPV9 WD repeat-containing protein LWD16772e-070
Q38960 WD repeat-containing protein LWD26602e-068
Q552R1 DDB1- and CUL4-associated factor 7 homolog5293e-053
P61962 DDB1- and CUL4-associated factor 73708e-035

TrEMBL top hits (Blast detail)Scoree value
A5HB99 WD-like protein10431e-111
A9XCN4 Transparent testa glabra 1 isoform 110431e-111
A9XCN7 Transparent testa glabra 1 isoform 210431e-111
B6RFA5 WD-repeat regulatory factor10393e-111
B6RFA4 WD-repeat regulatory factor10367e-111

Arabidopsis top hits (Blast detail)Scoree value
AT5G24520.1 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding10356e-113
AT5G24520.3 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding10356e-113
AT5G24520.2 TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding10356e-113
AT1G12910.1 ATAN11 (ANTHOCYANIN11); nucleotide binding6772e-071
AT3G26640.1 LWD2 (LIGHT-REGULATED WD 2); nucleotide binding6602e-069

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  50%
 
61  50%

Unigene MembersMember information